/usr/share/doc/ is in exonerate 2.4.0-3.
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/usr/share/doc/exonerate/
/usr/share/doc/exonerate/AUTHORS
/usr/share/doc/exonerate/README.gz
/usr/share/doc/exonerate/TODO.gz
/usr/share/doc/exonerate/changelog.Debian.gz
/usr/share/doc/exonerate/copyright
/usr/share/doc/exonerate/examples/
/usr/share/doc/exonerate/examples/data/
/usr/share/doc/exonerate/examples/data/cdna/
/usr/share/doc/exonerate/examples/data/cdna/calm.human.dna.fasta
/usr/share/doc/exonerate/examples/data/cdna/htrt.human.dna.fasta.gz
/usr/share/doc/exonerate/examples/data/cdna/p53.human.dna.fasta
/usr/share/doc/exonerate/examples/data/cdna/tube.drome.dna.fasta
/usr/share/doc/exonerate/examples/data/protein/
/usr/share/doc/exonerate/examples/data/protein/calm.human.protein.fasta
/usr/share/doc/exonerate/examples/data/protein/htrt.human.protein.fasta
/usr/share/doc/exonerate/examples/data/protein/p53.human.protein.fasta
/usr/share/doc/exonerate/examples/data/protein/tube.drome.protein.fasta
/usr/share/doc/exonerate/examples/exonerate/
/usr/share/doc/exonerate/examples/exonerate/exonerate.simple.test.sh
/usr/share/doc/exonerate/examples/ipcress/
/usr/share/doc/exonerate/examples/ipcress/ipcress.simple.test.sh
/usr/share/doc/exonerate/examples/util/
/usr/share/doc/exonerate/examples/util/fastaclean.test.sh
/usr/share/doc/exonerate/examples/util/fastaclip.test.sh
/usr/share/doc/exonerate/examples/util/fastacomposition.test.sh
/usr/share/doc/exonerate/examples/util/fastadiff.test.sh
/usr/share/doc/exonerate/examples/util/fastaexpode.test.sh
/usr/share/doc/exonerate/examples/util/fastaindex.fastafetch.test.sh
/usr/share/doc/exonerate/examples/util/fastalength.test.sh
/usr/share/doc/exonerate/examples/util/fastanrdb.test.sh
/usr/share/doc/exonerate/examples/util/fastaoverlap.test.sh
/usr/share/doc/exonerate/examples/util/fastarefomat.test.sh
/usr/share/doc/exonerate/examples/util/fastaremove.test.sh
/usr/share/doc/exonerate/examples/util/fastarevcomp.test.sh
/usr/share/doc/exonerate/examples/util/fastasoftmask.fastahardmask.test.sh
/usr/share/doc/exonerate/examples/util/fastasort.test.sh
/usr/share/doc/exonerate/examples/util/fastasplit.test.sh
/usr/share/doc/exonerate/examples/util/fastasubseq.test.sh
/usr/share/doc/exonerate/examples/util/fastatranslate.test.sh
/usr/share/doc/exonerate/examples/util/fastavalidcds.test.sh
/usr/share/doc/exonerate/ChangeLog.gz