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/usr/sbin/ipa-pkinit-manage is in freeipa-server 4.7.0~pre1+git20180411-2ubuntu2.

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#! /usr/bin/python2
#
# Copyright (C) 2017  FreeIPA Contributors see COPYING for license
#

from ipaserver.install.ipa_pkinit_manage import PKINITManage

PKINITManage.run_cli()