This file is indexed.

/etc/xdg/autostart/indicator-messages.desktop is in indicator-messages 13.10.1+17.04.20170120-0ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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[Desktop Entry]
Type=Application
Name=Indicator Messages
Exec=/usr/lib/x86_64-linux-gnu/indicator-messages/indicator-messages-service
StartupNotify=false
Terminal=false
OnlyShowIn=Unity;GNOME;
NoDisplay=true
AutostartCondition=GNOME3 unless-session gnome
X-Ubuntu-Gettext-Domain=indicator-messages