This package is 8.2 MB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/i/iva/iva_1.0.9+ds-4ubuntu1_amd64.deb
.
View its full control file here:
debian/control.
iterative virus sequence assembler
This package depends on:
fastaq (>= 1.6), python3-networkx, python3-pysam, python3:any (>= 3.3.2-2~), kmc, mummer, smalt, samtools, python3-numpy, default-jre-headless.
This package recommends:
r-base-core, bioperl, trimmomatic.
This package does not suggest any other package.
This package does not conflict with any other package.
iva 1.0.9+ds-4ubuntu1 is in ubuntu - bionic / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
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postinst
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text/x-shellscript | N/A | N/A | 162 bytes |
prerm
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text/x-shellscript | N/A | N/A | 381 bytes |
/usr/
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root:root | 0o755 | ||
/usr/bin/
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root:root | 0o755 | ||
/usr/bin/iva
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text/x-python | root:root | 0o755 | 16.8 KB |
/usr/bin/iva_qc
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text/x-python | root:root | 0o755 | 6.1 KB |
/usr/bin/iva_qc_make_db
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text/x-python | root:root | 0o755 | 2.3 KB |
/usr/lib/
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root:root | 0o755 | ||
/usr/lib/python3/
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root:root | 0o755 | ||
/usr/lib/python3/dist-packages/
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root:root | 0o755 | ||
/usr/lib/python3/dist-packages/iva/
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root:root | 0o755 | ||
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/
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root:root | 0o755 | ||
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt
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application/octet-stream | root:root | 0o644 | 1 byte |
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO
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text/plain | root:root | 0o644 | 483 bytes |
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt
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application/x-empty | root:root | 0o644 | 0 bytes |
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt
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text/plain | root:root | 0o644 | 4 bytes |
/usr/lib/python3/dist-packages/iva/assembly.py
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text/x-c++ | root:root | 0o644 | 27.4 KB |
/usr/lib/python3/dist-packages/iva/common.py
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text/x-c++ | root:root | 0o644 | 1.8 KB |
/usr/lib/python3/dist-packages/iva/contig.py
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text/x-c++ | root:root | 0o644 | 1.9 KB |
/usr/lib/python3/dist-packages/iva/contig_trim.py
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text/x-c++ | root:root | 0o644 | 4.3 KB |
/usr/lib/python3/dist-packages/iva/edge.py
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text/x-c++ | root:root | 0o644 | 4.8 KB |
/usr/lib/python3/dist-packages/iva/egg_extract.py
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text/x-c++ | root:root | 0o644 | 3.0 KB |
/usr/lib/python3/dist-packages/iva/external_progs.py
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text/x-c++ | root:root | 0o644 | 4.0 KB |
/usr/lib/python3/dist-packages/iva/gage/
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root:root | 0o755 | ||
/usr/lib/python3/dist-packages/iva/gage/colsum.pl
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text/x-perl | root:root | 0o755 | 80 bytes |
/usr/lib/python3/dist-packages/iva/gage/getCorrectnessStats.sh
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text/x-shellscript | root:root | 0o755 | 1.7 KB |
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
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application/x-java-applet | root:root | 0o644 | 9.9 KB |
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
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application/x-java-applet | root:root | 0o644 | 489 bytes |
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.java
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text/x-java | root:root | 0o644 | 14.5 KB |
/usr/lib/python3/dist-packages/iva/gage/getMummerStats.sh
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text/x-shellscript | root:root | 0o755 | 1.4 KB |
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$1.class
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application/x-java-applet | root:root | 0o644 | 196 bytes |
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class
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application/x-java-applet | root:root | 0o644 | 13.5 KB |
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.java
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text/x-java | root:root | 0o644 | 18.7 KB |
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
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application/x-java-applet | root:root | 0o644 | 1.2 KB |
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
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application/x-java-applet | root:root | 0o644 | 3.6 KB |
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.java
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text/x-c | root:root | 0o644 | 3.5 KB |
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
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application/x-java-applet | root:root | 0o644 | 2.8 KB |
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.java
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text/x-c | root:root | 0o644 | 2.2 KB |
/usr/lib/python3/dist-packages/iva/gage/Utils.class
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application/x-java-applet | root:root | 0o644 | 5.8 KB |
/usr/lib/python3/dist-packages/iva/gage/Utils.java
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text/x-java | root:root | 0o644 | 9.0 KB |
/usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
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application/x-java-applet | root:root | 0o644 | 621 bytes |
/usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
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application/x-java-applet | root:root | 0o644 | 4.5 KB |
/usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
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application/x-java-applet | root:root | 0o644 | 1.2 KB |
/usr/lib/python3/dist-packages/iva/graph.py
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text/x-c++ | root:root | 0o644 | 7.0 KB |
/usr/lib/python3/dist-packages/iva/__init__.py
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text/x-python | root:root | 0o644 | 1.0 KB |
/usr/lib/python3/dist-packages/iva/kcount.py
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text/x-c++ | root:root | 0o644 | 9.3 KB |
/usr/lib/python3/dist-packages/iva/kmers.py
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text/x-c++ | root:root | 0o644 | 3.4 KB |
/usr/lib/python3/dist-packages/iva/kraken.py
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text/x-c++ | root:root | 0o644 | 16.6 KB |
/usr/lib/python3/dist-packages/iva/mapping.py
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text/x-c++ | root:root | 0o644 | 12.9 KB |
/usr/lib/python3/dist-packages/iva/mummer.py
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text/x-c++ | root:root | 0o644 | 8.2 KB |
/usr/lib/python3/dist-packages/iva/qc_external.py
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text/x-c++ | root:root | 0o644 | 8.0 KB |
/usr/lib/python3/dist-packages/iva/qc.py
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text/x-c++ | root:root | 0o644 | 35.8 KB |
/usr/lib/python3/dist-packages/iva/ratt/
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/usr/lib/python3/dist-packages/iva/ratt/embl2gff.pl
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text/x-perl | root:root | 0o755 | 1012 bytes |
/usr/lib/python3/dist-packages/iva/ratt/genbank2embl.pl
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text/x-perl | root:root | 0o755 | 1.0 KB |
/usr/lib/python3/dist-packages/iva/ratt/main.ratt.pl
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text/x-perl | root:root | 0o755 | 41.0 KB |
/usr/lib/python3/dist-packages/iva/ratt/ratt.config
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text/plain | root:root | 0o644 | 90 bytes |
/usr/lib/python3/dist-packages/iva/ratt/ratt.config.hiv
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text/plain | root:root | 0o644 | 90 bytes |
/usr/lib/python3/dist-packages/iva/ratt/ratt_correction.pm
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text/plain | root:root | 0o644 | 56.3 KB |
/usr/lib/python3/dist-packages/iva/ratt/start.ratt.sh
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text/x-shellscript | root:root | 0o755 | 12.9 KB |
/usr/lib/python3/dist-packages/iva/read_trim/
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root:root | 0o755 | ||
/usr/lib/python3/dist-packages/iva/read_trim/adapters.fasta
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text/plain | root:root | 0o644 | 3.1 KB |
/usr/lib/python3/dist-packages/iva/read_trim.py
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text/x-python | root:root | 0o644 | 1.4 KB |
/usr/lib/python3/dist-packages/iva/seed_processor.py
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text/x-c++ | root:root | 0o644 | 5.5 KB |
/usr/lib/python3/dist-packages/iva/seed.py
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text/x-c++ | root:root | 0o644 | 5.9 KB |
/usr/lib/python3/dist-packages/iva/test_data_runner.py
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text/x-c++ | root:root | 0o644 | 2.4 KB |
/usr/lib/python3/dist-packages/iva/test_run_data/
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/usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa
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text/plain | root:root | 0o644 | 672 bytes |
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta
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text/plain | root:root | 0o644 | 9.7 KB |
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta
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text/plain | root:root | 0o644 | 9.0 KB |
/usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz
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application/gzip | root:root | 0o644 | 3.6 MB |
/usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz
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application/gzip | root:root | 0o644 | 4.4 MB |
/usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta
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text/plain | root:root | 0o644 | 9.0 KB |
/usr/share/
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/usr/share/doc/
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/usr/share/doc/iva/
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/usr/share/doc/iva/changelog.Debian.gz
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application/gzip | root:root | 0o644 | 842 bytes |
/usr/share/doc/iva/copyright
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/usr/share/man/
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/usr/share/man/man1/
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/usr/share/man/man1/iva.1.gz
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application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/iva_qc.1.gz
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application/gzip | root:root | 0o644 | 1.2 KB |
/usr/share/man/man1/iva_qc_make_db.1.gz
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application/gzip | root:root | 0o644 | 642 bytes |