This file is indexed.

/usr/include/BALL/VIEW/DIALOGS/peptideDialog.h is in libballview1.4-dev 1.4.3~beta1-4.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
// -*- Mode: C++; tab-width: 2; -*-
// vi: set ts=2:
//

#ifndef BALL_VIEW_DIALOGS_PEPTIDEDIALOG_H
#define BALL_VIEW_DIALOGS_PEPTIDEDIALOG_H

#ifndef BALL_COMMON_GLOBAL_H
# include <BALL/COMMON/global.h>
#endif

#ifndef BALL_STRUCTURE_PEPTIDEBUILDER_H
#include <BALL/STRUCTURE/peptideBuilder.h>
#endif

#include <BALL/VIEW/UIC/ui_peptideDialog.h>

namespace BALL
{
	namespace VIEW
	{
		/** Dialog for building peptides
				\ingroup ViewDialogs
		*/
		class BALL_VIEW_EXPORT PeptideDialog
			: public QDialog,
				public Ui_PeptideDialogData,
				public Peptides::PeptideBuilder
		{ 
			Q_OBJECT

			public:

			/// Constructor
			PeptideDialog( QWidget* parent = 0, const char* name = "PeptideDialog", Qt::WFlags fl = 0 );

			/// Destructor
			~PeptideDialog() {}

			///
			String getSequence();

			///
			Protein* getProtein() { return protein_;}

			public slots:

			///
			void ala_pressed() {insert_('a');}

			///
			void arg_pressed() {insert_('r');}
			
			///
			void asn_pressed() {insert_('n');}
			
			///
			void asp_pressed() {insert_('d');}
			
			///
			void cys_pressed() {insert_('c');}
			
			///
			void gln_pressed() {insert_('q');}
			
			///
			void glu_pressed() {insert_('e');}
			
			///
			void gly_pressed() {insert_('g');}
			
			///
			void his_pressed() {insert_('h');}
			
			///
			void ile_pressed() {insert_('i');}
			
			///
			void leu_pressed() {insert_('l');}
			
			///
			void lys_pressed() {insert_('k');}
			
			///
			void met_pressed() {insert_('m');}
			
			///
			void phe_pressed() {insert_('f');}
			
			///
			void pro_pressed() {insert_('p');}
			
			///
			void ser_pressed() {insert_('s');}
			
			///
			void thr_pressed() {insert_('t');}
			
			///
			void trp_pressed() {insert_('w');}
			
			///
			void tyr_pressed() {insert_('y');}
			
			///
			void val_pressed() {insert_('v');}

			///
			void back_pressed();

			///
			void close_pressed();

			///
			void angle_changed();
			
			///
			void insert_seq();
				
			///
			void prolineActivated(); 
      
			///
			void prolineDeactivated();

			///
			virtual bool eventFilter(QObject* object, QEvent* event);

			protected:
 
			void insert_(char a);

			void truncString_(String& data);

			bool isAminoAcid_(char a) const;

			Protein* protein_;
			static String all_amino_acids_;
		};

} } // namespaces
#endif