/usr/bin/genomeCoverageBed.pl is in libbio-samtools-perl 1.43-1build3.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 | #!/usr/bin/perl
use strict;
use FindBin '$Bin';
use lib "$Bin/../blib/lib","$Bin/../blib/arch";
use Bio::DB::Sam;
my $bamfile = shift or die "Usage $0 <bamfile>\n";
my $bam = Bio::DB::Sam->new(-bam=>$bamfile)
or die "Couldn't open $bamfile: $!";
$bam->coverage2BedGraph();
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