/usr/include/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BCFoundationDefines.h is in libbiococoa-dev 2.2.2-3build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 | //
// BCFoundationDefines.h
// BioCocoa
//
// Created by Alexander Griekspoor on 9/12/04.
// Copyright (c) 2003-2009 The BioCocoa Project.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions
// are met:
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// 3. The name of the author may not be used to endorse or promote products
// derived from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
// IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
// NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
/*!
@header
@abstract Global macros, enumerations and data structure for BioCocoa Foundation.
@discussion This header declares global macros, enumerations and data structures
for the BioCocoa Foundation Framework. Import the top-level header
file BCFoundation.h to get these definitions as well as the BioCocoa
Foundation classes.
*/
////////////////////////////////////////////////////////////////////////////
// GLOBAL DEFINES
////////////////////////////////////////////////////////////////////////////
#define hydrogenMonoisotopicMass 1.00782503
#define oxygenMonoisotopicMass 15.99491463
#define hydrogenAverageMass 1.01
#define oxygenAverageMass 15.996
////////////////////////////////////////////////////////////////////////////
// GLOBAL ENUMs
////////////////////////////////////////////////////////////////////////////
/*!
@enum BCSequenceType
@abstract A list of sequence types, for readability
@constant BCSequenceTypeOther something we haven't thought of yet
@constant BCSequenceTypeDNA DNA
@constant BCSequenceTypeRNA RNA
@constant BCSequenceTypeProtein Protein
@constant BCSequenceTypeCodon Codon
*/
typedef enum BCSequenceType {
BCSequenceTypeOther = 0,
BCSequenceTypeDNA = 1,
BCSequenceTypeRNA = 2,
BCSequenceTypeProtein = 3,
BCSequenceTypeCodon = 4
} BCSequenceType;
/*!
@enum BCGeneticCodeName
@abstract Provides an ordered list of possible genetic codes. Allows for a lightweight, readable implementation.
*/
typedef enum BCGeneticCodeName {
BCUniversalCode = 1,
BCVertebrateMitochondrial = 2
} BCGeneticCodeName;
/*!
@enum BCMassType
@abstract A list of mass types, for calculating molecular masses
@constant BCMonoisotopic
@constant BCAverage
*/
typedef enum BCMassType {
BCMonoisotopic = 1,
BCAverage = 2
} BCMassType;
/*!
@enum BCHydropathyType
@abstract A list of hydropathy types, for calculating hydropathy values
@constant BCKyteDoolittle
@constant BCHoppWoods
*/
typedef enum BCHydropathyType {
BCKyteDoolittle = 1,
BCHoppWoods = 2
} BCHydropathyType;
/*!
@enum BCSecondaryStructureType
@abstract A list of secondary structure types, for readability
@constant BCAnyStructure something we haven't thought of yet
@constant BCHelix Alpha helix
@constant BCSheet Beta sheet
@constant BCTurn Turn
*/
typedef enum BCSecondaryStructureType {
BCAnyStructure = 0,
BCHelix = 1,
BCSheet = 2,
BCTurn = 3
} BCSecondaryStructureType;
|