/usr/include/pbseq/alignment/simulator/ContextSample.hpp is in libblasr-dev 0~20161219-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | #ifndef _SIMULATOR_CONTEXT_SAMPLE_HPP_
#define _SIMULATOR_CONTEXT_SAMPLE_HPP_
#include<string>
#include<vector>
#include<iostream>
#include "QualitySample.hpp"
#include "../statistics/StatUtils.hpp"
class ContextSample {
public:
std::vector<QualitySample> samples;
size_t minSamples;
size_t maxSamples;
int reachedMinSamples;
ContextSample();
size_t GetNSamples();
int AppendSample(SMRTSequence &seq, DNALength pos);
QualitySample* GetRandomQualitySample();
void Write(std::ofstream &out);
void Read(std::ifstream &in);
};
#endif
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