/usr/include/pbseq/alignment/simulator/LengthHistogram.hpp is in libblasr-dev 0~20161219-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | #ifndef _SIMULATOR_LENGTH_HISTOGRAM_HPP_
#define _SIMULATOR_LENGTH_HISTOGRAM_HPP_
#include <iostream>
#include <string>
#include <vector>
#include "CDFMap.hpp"
#include "../../pbdata/alignment/CmpAlignment.hpp" // pbdata
#include "../../pbdata/utils.hpp"
class LengthHistogram {
public:
CDFMap<int> lengthHistogram;
int Read(std::string &inName);
int Read(std::ifstream &in);
void GetRandomLength(int &length);
void BuildFromAlignmentLengths(std::vector<int> &lengths);
};
#endif
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