/usr/include/camitk-4.0/actions/multipicking/PickedPixelMap.h

/*****************************************************************************
 * $CAMITK_LICENCE_BEGIN$
 *
 * CamiTK - Computer Assisted Medical Intervention ToolKit
 * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
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#ifndef PICKEDPIXELMAP_H
#define PICKEDPIXELMAP_H

#include <QWidget>
#include <qvector3d.h>

#include "MultiPickingAPI.h"
#include "ImageComponent.h"


/**
 * @ingroup group_sdk_actions_image_multipicking
 *
 * @brief
 * This class is dedicated to manage an ImageComponent with a list of selected/picked pixels.
 * This class allows one to manage a generic list of pixels too (add, remove, modify and save some points).
 *
 * Since Frame Usage in CamiTK, PickedPixelMap stores 4 lists:
 * - pixelIndexList which stores the picked pixel position as image indices, i.e. integers number of voxels since the image origin (line first, then columns, then depth)
 * - localCoordIndexList which stores the pixel position as image real coordinates with the zero of the image at the origin of the image, i.e. this list takes voxel size into account
 * - realCoordIndexList which stores the pixel positions in the real world frame, that may not be the image frame.
 * - pixelValue: for each index/coord/real coord, stores the gray level value of the image.
 *
 * No convertion between the lists is done in this class. These conversions are done at pixel clickin by the ImageComponent.
 *
 */
class MULTIPICKING_API PickedPixelMap {

public:
    /// constructor
    PickedPixelMap (camitk::ImageComponent*);

    /// destructor
    virtual ~PickedPixelMap();

    /** Allows one to remove one pixel in the list
     * @param id the index in the list of the pixel to remove
     */
    void removePixel (int id);

    /** Allows one to modify one pixel in the list
     * @param row the index in the list of the pixel to modify using the last picked pixel
     */
    void modifyPixel (int row);

    /// Allows one to add a pixel in the list using the last picked pixel
    void addPixel();

    /** save the list of pixel in a given file base name (CSV format, separator = comma).
     *  ".csv" is automatically added if needed.
     * the format is : index (int) , i (int) , j (int) , k (int) , x (double) , y (double) , z (double)
     * @param fileName the location where the file will be saved
     */
    void savePixelList (QString fileName);

    /** open a list of pixel in a given file base name (CSV format, separator = comma).
     *  the format is : index (int) , i (int) , j (int) , k (int) , x (double) , y (double) , z (double)
     **/
    void openPixelList (QString fileName);

    /// return the list of pixel index
    QList<QVector3D>* getPixelIndexList();

    /// return the list of coordinates pixel index
    QList<QVector3D>* getCoordIndexList();
    
    /// return the list of coordinates in real world frame
    QList<QVector3D>* getRealWorldList();

    /// return the liste of pixel values
    QList<double> * getPixelValueList();

    /// the managed ImageComponent
    camitk::ImageComponent* getImage();

    /// Empties the pixel list.
    void resetPixelList();

    // TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
    /** Deprecated.
    /// Change pixel list (copy the one given in parameters)
     */
    void changePixelIndexList(QList<QVector3D> * liste);


    // TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
    /** Deprecated.
     /// Change pixel list from a list of real coordinates
     */
    void changePixelIndexListFromRealCoordinates(QList<QVector3D> * listeOfRealCoords);


private:

    // No more conversion in this class. Conversions are asked to ImageComponent while picking...
//    /** conversion pixel index to coordinates
//     * @param i the first index pixel to retrieve x in coordinate
//     * @param j the second index pixel to retrieve y in coordinate
//     * @param k the third index pixel to retrieve z in coordinate
//     */
//    QVector3D convertIndexToCoordinates (int i, int j, int k);
//
//    /** conversion pixel index to coordinates
//     * @param x
//     * @param y
//     * @param z
//     */
//    QVector3D convertCoordinatesToIndex (double x, double y, double z);

    /// this is a list of pixels (as i,j,k indexes in the 3 directions)
    QList<QVector3D> *pixelIndexList;
    
    /// list of corresponding image coordinates, i.e. taking voxel size into account, but in the local frame of the image
    QList<QVector3D> *coordIndexList;
    
    /// list of corresponding coordinates in real world frame.
    QList<QVector3D> *realCoordList;
    
    /// list of corresponding pixel values
    QList<double> *pixelValueList;

    /// ImageComponent where the pixels are clicked
    camitk::ImageComponent *image;

};

#endif // PICKEDPIXELMAP_H
libcamitk-dev 4.0.4-2ubuntu4 / usr / include / camitk-4.0 / actions / multipicking / PickedPixelMap.h
