/usr/include/genometools/extended/region_node_api.h is in libgenometools0-dev 1.5.10+ds-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 | /*
Copyright (c) 2006-2008 Gordon Gremme <gordon@gremme.org>
Copyright (c) 2006-2008 Center for Bioinformatics, University of Hamburg
Permission to use, copy, modify, and distribute this software for any
purpose with or without fee is hereby granted, provided that the above
copyright notice and this permission notice appear in all copies.
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
*/
#ifndef REGION_NODE_API_H
#define REGION_NODE_API_H
/* Implements the <GtGenomeNode> interface. Region nodes correspond to the
<##sequence-region> lines in GFF3 files.*/
typedef struct GtRegionNode GtRegionNode;
#include "extended/genome_node_api.h"
#include "core/str_api.h"
const GtGenomeNodeClass* gt_region_node_class(void);
/* Create a new <GtRegionNode*> representing sequence with ID <seqid> from
base position <start> to base position <end> (1-based).
<start> has to be smaller or equal than <end>.
The <GtRegionNode*> stores a new reference to <seqid>, so make sure you do
not modify the original <seqid> afterwards! */
GtGenomeNode* gt_region_node_new(GtStr *seqid, GtUword start,
GtUword end);
/* Test whether the given genome node is a region node. If so, a pointer to the
region node is returned. If not, NULL is returned. Note that in most cases,
one should implement a GtNodeVisitor to handle processing of different
GtGenomeNode types. */
GtRegionNode* gt_region_node_try_cast(GtGenomeNode *gn);
/* Test whether the given genome node is a region node. If so, a pointer to the
region node is returned. If not, an assertion fails. */
GtRegionNode* gt_region_node_cast(GtGenomeNode *gn);
#endif
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