This file is indexed.

/usr/include/ghemical/eng2_qm_mm.h is in libghemical-dev 3.0.0-4.1build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
// ENG2_QM_MM.H : the mixed QM/MM "engine" classes.

// Copyright (C) 2002 Tommi Hassinen.

// This package is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.

// This package is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.

// You should have received a copy of the GNU General Public License
// along with this package; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA

/*################################################################################################*/

#ifndef ENG2_QM_MM_H
#define ENG2_QM_MM_H

#include "libghemical-features.h"

class setup2_qm_mm;

#include "eng1_qm.h"
#include "eng1_mm_default.h"

#ifdef ENABLE_MOPAC7
class eng2_qm_mm_mopac;
#include "eng1_qm_mopac.h"
#endif	// ENABLE_MOPAC7

#ifdef ENABLE_MPQC
class eng2_qm_mm_mpqc;
#include "eng1_qm_mpqc.h"
#endif	// ENABLE_MPQC

/*################################################################################################*/

class setup2_qm_mm : public setup1_qm, public setup1_mm
{
	protected:

	static const i32u eng_id_tab[];
	static const char * eng_name_tab[];
	
	public:
	
	setup2_qm_mm(model *);
	~setup2_qm_mm(void);

	void UpdateAtomFlags(void);		// virtual
	
	static i32u static_GetEngineCount(void);
	static i32u static_GetEngineIDNumber(i32u);
	static const char * static_GetEngineName(i32u);
	static const char * static_GetClassName(void);
	
	i32u GetEngineCount(void);		// virtual
	i32u GetEngineIDNumber(i32u);		// virtual
	const char * GetEngineName(i32u);	// virtual
	const char * GetClassName_lg(void);	// virtual
	
	engine * CreateEngineByIndex(i32u);	// virtual
};

/*################################################################################################*/

#ifdef ENABLE_MOPAC7

class eng2_qm_mm_mopac : public eng1_qm_mopac, public eng1_mm_default_bp
{
	protected:
	
	public:
	
	eng2_qm_mm_mopac(setup *, i32u, i32u);
	~eng2_qm_mm_mopac(void);
	
	i32s GetOrbitalCount(void);	// virtual
	f64 GetOrbitalEnergy(i32s);	// virtual
	
	i32s GetElectronCount(void);	// virtual
	
	void Compute(i32u, bool = false);	// virtual
	
	virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
	virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
	
	void SetupPlotting(void);	// virtual
	
	fGL GetVDWSurf(fGL *, fGL *);	// virtual
	
	fGL GetESP(fGL *, fGL *);	// virtual
	
	fGL GetElDens(fGL *, fGL *);	// virtual
	
	fGL GetOrbital(fGL *, fGL *);	// virtual
	fGL GetOrbDens(fGL *, fGL *);	// virtual
};

#endif	// ENABLE_MOPAC7

/*################################################################################################*/

#ifdef ENABLE_MPQC

class eng2_qm_mm_mpqc : public eng1_qm_mpqc, public eng1_mm_default_bp
{
	protected:
	
	public:
	
	eng2_qm_mm_mpqc(setup *, i32u, i32u);
	~eng2_qm_mm_mpqc(void);
	
	i32s GetOrbitalCount(void);	// virtual
	f64 GetOrbitalEnergy(i32s);	// virtual
	
	i32s GetElectronCount(void);	// virtual
	
	void Compute(i32u, bool = false);	// virtual
	
	virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
	virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
	
	void SetupPlotting(void);	// virtual

	fGL GetVDWSurf(fGL *, fGL *);	// virtual
	
	fGL GetESP(fGL *, fGL *);	// virtual
	
	fGL GetElDens(fGL *, fGL *);	// virtual
	
	fGL GetOrbital(fGL *, fGL *);	// virtual
	fGL GetOrbDens(fGL *, fGL *);	// virtual
};

#endif	// ENABLE_MPQC

/*################################################################################################*/

#endif	// ENG2_QM_MM_H

// eof