/usr/include/gromacs/options/filenameoption.h is in libgromacs-dev 2018.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 | /*
* This file is part of the GROMACS molecular simulation package.
*
* Copyright (c) 2012,2013,2014,2015,2017, by the GROMACS development team, led by
* Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
* and including many others, as listed in the AUTHORS file in the
* top-level source directory and at http://www.gromacs.org.
*
* GROMACS is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public License
* as published by the Free Software Foundation; either version 2.1
* of the License, or (at your option) any later version.
*
* GROMACS is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with GROMACS; if not, see
* http://www.gnu.org/licenses, or write to the Free Software Foundation,
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*
* If you want to redistribute modifications to GROMACS, please
* consider that scientific software is very special. Version
* control is crucial - bugs must be traceable. We will be happy to
* consider code for inclusion in the official distribution, but
* derived work must not be called official GROMACS. Details are found
* in the README & COPYING files - if they are missing, get the
* official version at http://www.gromacs.org.
*
* To help us fund GROMACS development, we humbly ask that you cite
* the research papers on the package. Check out http://www.gromacs.org.
*/
/*! \file
* \brief
* Declares gmx::FileNameOption and gmx::FileNameOptionInfo.
*
* \author Teemu Murtola <teemu.murtola@gmail.com>
* \inpublicapi
* \ingroup module_options
*/
#ifndef GMX_OPTIONS_FILENAMEOPTION_H
#define GMX_OPTIONS_FILENAMEOPTION_H
#include <string>
#include <vector>
#include "gromacs/options/abstractoption.h"
#include "gromacs/options/optionfiletype.h"
namespace gmx
{
template <typename T> class ArrayRef;
class FileNameOptionInfo;
class FileNameOptionManager;
class FileNameOptionStorage;
/*! \brief
* Specifies an option that provides file names.
*
* Public methods in this class do not throw.
*
* \inpublicapi
* \ingroup module_options
*/
class FileNameOption : public OptionTemplate<std::string, FileNameOption>
{
public:
//! OptionInfo subclass corresponding to this option type.
typedef FileNameOptionInfo InfoType;
//! Initializes an option with the given name.
explicit FileNameOption(const char *name)
: MyBase(name), optionType_(eftUnknown), legacyType_(-1),
defaultBasename_(nullptr), defaultType_(-1),
bLegacyOptionalBehavior_(false),
bRead_(false), bWrite_(false), bLibrary_(false),
bAllowMissing_(false)
{
}
/*! \brief
* Sets the type of the file this option accepts.
*
* Either this attribute or legacyType() must be provided.
*/
MyClass &filetype(OptionFileType type)
{ optionType_ = type; return me(); }
/*! \brief
* Sets the type of the file from an enum in filetypes.h.
*
* New code should prefer filetype(), extending the enumeration if
* necessary.
*/
MyClass &legacyType(int type)
{ legacyType_ = type; return me(); }
/*! \brief
* Changes the behavior of optional options to match old t_filenm.
*
* If this is not set, optional options return an empty string if not
* set. If this is set, a non-empty value is always returned.
* In the latter case, whether the option is set only affects the
* return value of OptionInfo::isSet() and Options::isSet().
*/
MyClass &legacyOptionalBehavior()
{ bLegacyOptionalBehavior_ = true; return me(); }
//! Tells that the file provided by this option is used for input only.
MyClass &inputFile()
{ bRead_ = true; bWrite_ = false; return me(); }
//! Tells that the file provided by this option is used for output only.
MyClass &outputFile()
{ bRead_ = false; bWrite_ = true; return me(); }
/*! \brief
* Tells that the file provided by this option is used for input and
* output both.
*/
MyClass &inputOutputFile()
{ bRead_ = bWrite_ = true; return me(); }
/*! \brief
* Sets the read/write usage for this file from boolean flags.
*/
MyClass &readWriteFlags(bool bRead, bool bWrite)
{ bRead_ = bRead; bWrite_ = bWrite; return me(); }
/*! \brief
* Tells that the file will be looked up in library directories in
* addition to working directory.
*
* \todo
* Currently, this flag only affects the help output. Callers must
* take care themselves to actually search the file in the library
* directories. It would be nicer to do this searching within the
* file name option implementation.
*/
MyClass &libraryFile(bool bLibrary = true)
{ bLibrary_ = bLibrary; return me(); }
/*! \brief
* Tells that missing file names explicitly provided by the user are
* valid for this input option.
*
* If this method is not called, an error will be raised if the user
* explicitly provides a file name that does not name an existing file,
* or if the default value does not resolve to a valid file name for a
* required option that the user has not set.
*
* This method only has effect with input files, and only if a
* FileNameOptionManager is being used.
*/
MyClass &allowMissing(bool bAllow = true)
{ bAllowMissing_ = bAllow; return me(); }
/*! \brief
* Sets a default basename for the file option.
*
* Use this method instead of defaultValue() or defaultValueIfSet() to
* set a default value for a file name option. No extension needs to
* be provided; it is automatically added based on filetype() or
* defaultType().
* The behavior is also adjusted based on required(): if the option is
* required, the value given to defaultBasename() is treated as for
* both defaultValue() and defaultValueIfSet(), otherwise it is treated
* as for defaultValueIfSet().
*
* For input files that accept multiple extensions, the extension is
* completed to the default extension on creation of the option or at
* time of parsing an option without a value.
*
* If FileNameOptionManager is used, the extension may change during
* Options::finish(), as this is the time when the default names are
* checked against the file system to provide an extension that matches
* an existing file if that is possible.
*
* If FileNameOptionManager is used, and
* FileNameOptionManager::addDefaultFileNameOption() is used, and the
* user provides a global default file name using that option, then the
* global default takes precedence over defaultBasename().
*/
MyClass &defaultBasename(const char *basename)
{ defaultBasename_ = basename; return me(); }
/*! \brief
* Sets a default type/extension for the file option.
*
* For options that accept multiple types of files (e.g.,
* eftTrajectory), this method sets the default extension used
* for completing defaultBasename(), as well as the default extension
* used by FileNameOptionManager to complete various file names.
*
* The value should be one of the enumerated `ef*` values from
* filetypes.h, and be a valid type for the type specified with
* filetype().
*/
MyClass &defaultType(int filetype)
{ defaultType_ = filetype; return me(); }
private:
// Use defaultBasename() instead.
using MyBase::defaultValue;
using MyBase::defaultValueIfSet;
//! Creates a FileNameOptionStorage object.
virtual AbstractOptionStorage *createStorage(
const OptionManagerContainer &managers) const;
OptionFileType optionType_;
int legacyType_;
const char *defaultBasename_;
int defaultType_;
bool bLegacyOptionalBehavior_;
bool bRead_;
bool bWrite_;
bool bLibrary_;
bool bAllowMissing_;
/*! \brief
* Needed to initialize FileNameOptionStorage from this class without
* otherwise unnecessary accessors.
*/
friend class FileNameOptionStorage;
};
/*! \brief
* Wrapper class for accessing file name option information.
*
* \inpublicapi
* \ingroup module_options
*/
class FileNameOptionInfo : public OptionInfo
{
public:
//! Shorthand for a list of extensions.
typedef std::vector<const char *> ExtensionList;
//! Creates an option info object for the given option.
explicit FileNameOptionInfo(FileNameOptionStorage *option);
//! Whether the option specifies an input file.
bool isInputFile() const;
//! Whether the option specifies an output file.
bool isOutputFile() const;
//! Whether the option specifies a file used for both input and output.
bool isInputOutputFile() const;
/*! \brief
* Whether the option specifies a library file.
*
* \see FileNameOption::libraryFile()
*/
bool isLibraryFile() const;
//! Whether the (input) option allows missing files to be provided.
bool allowMissing() const;
//! Whether the option specifies directories.
bool isDirectoryOption() const;
//! Whether the option specifies a generic trajectory file.
bool isTrajectoryOption() const;
//! Returns the default extension for this option.
const char *defaultExtension() const;
//! Returns the list of extensions this option accepts.
ExtensionList extensions() const;
//! Returns whether \p fileType (from filetypes.h) is accepted for this option.
bool isValidType(int fileType) const;
//! Returns the list of file types this option accepts.
ArrayRef<const int> fileTypes() const;
private:
const FileNameOptionStorage &option() const;
};
} // namespace gmx
#endif
|