/usr/include/kmer/bio/alphabet.h is in libkmer-dev 0~20150903+r2013-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | //
// Automagically generated -- DO NOT EDIT!
// See libbri/alphabet-generate.c for details.
//
#ifdef __cplusplus
extern "C" {
#endif
extern unsigned char whitespaceSymbol[256];
extern unsigned char toLower[256];
extern unsigned char toUpper[256];
extern unsigned char letterToBits[256];
extern unsigned char bitsToLetter[256];
extern unsigned char bitsToColor[256];
extern unsigned char complementSymbol[256];
extern unsigned char IUPACidentity[128][128];
extern unsigned char baseToColor[128][128];
void initCompressionTablesForACGTSpace(void);
void initCompressionTablesForColorSpace(void);
#ifdef __cplusplus
}
#endif
|