This file is indexed.

/usr/include/openturns/KrigingResult.hxx is in libopenturns-dev 1.9-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
//                                               -*- C++ -*-
/**
 *  @brief The result of a kriging estimation
 *
 *  Copyright 2005-2017 Airbus-EDF-IMACS-Phimeca
 *
 *  This library is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU Lesser General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public
 *  along with this library.  If not, see <http://www.gnu.org/licenses/>.
 *
 */
#ifndef OPENTURNS_KRIGINGRESULT_HXX
#define OPENTURNS_KRIGINGRESULT_HXX

#include "openturns/MetaModelResult.hxx"
#include "openturns/CovarianceModel.hxx"
#include "openturns/Sample.hxx"
#include "openturns/Collection.hxx"
#include "openturns/Basis.hxx"
#include "openturns/PersistentCollection.hxx"
#include "openturns/Function.hxx"
#include "openturns/Normal.hxx"
#include "openturns/HMatrix.hxx"
#include "openturns/Basis.hxx"

BEGIN_NAMESPACE_OPENTURNS

/**
 * @class KrigingResult
 *
 * The result of a chaos expansion
 */

class OT_API KrigingResult
  : public MetaModelResult
{
  CLASSNAME;

public:

  // friend class Factory<KrigingResult>;
  typedef Collection<Point> PointCollection;
  typedef PersistentCollection<Point> PointPersistentCollection;
  typedef Collection<Basis> BasisCollection;
  typedef PersistentCollection<Basis> BasisPersistentCollection;

  /** Default constructor */
  KrigingResult();

  /** Parameter constructor without any cholesky factor*/
  KrigingResult(const Sample & inputSample,
                const Sample & outputSample,
                const Function & metaModel,
                const Point & residuals,
                const Point & relativeErrors,
                const BasisCollection & basis,
                const PointCollection & trendCoefficients,
                const CovarianceModel & covarianceModel,
                const Sample & covarianceCoefficients);

  /** Parameter constructor with Cholesky factor (Lapack)*/
  KrigingResult(const Sample & inputSample,
                const Sample & outputSample,
                const Function & metaModel,
                const Point & residuals,
                const Point & relativeErrors,
                const BasisCollection & basis,
                const PointCollection & trendCoefficients,
                const CovarianceModel & covarianceModel,
                const Sample & covarianceCoefficients,
                const TriangularMatrix & covarianceCholeskyFactor,
                const HMatrix & covarianceHMatrix);

  /** Virtual constructor */
  virtual KrigingResult * clone() const;

  /** String converter */
  virtual String __repr__() const;
  virtual String __str__(const String & offset = "") const;

  /** Design accessors */
  virtual Sample getInputSample() const;
  virtual Sample getOutputSample() const;

  /** Trend basis accessor */
  virtual BasisCollection getBasisCollection() const;

  /** Trend coefficients accessor */
  virtual PointCollection getTrendCoefficients() const;

  /** Conditional covariance models accessor */
  virtual CovarianceModel getCovarianceModel() const;

  /** Process coefficients accessor */
  virtual Sample getCovarianceCoefficients() const;

  /** Transformation accessor */
  virtual Function getTransformation() const;
  virtual void setTransformation(const Function & transformation);

  /** Compute mean of new points conditionnaly to observations */
  virtual Point getConditionalMean(const Sample & xi) const;

  /** Compute mean of new points conditionnaly to observations */
  virtual Point getConditionalMean(const Point & xi) const;

  /** Compute covariance matrix conditionnaly to observations*/
  virtual CovarianceMatrix getConditionalCovariance(const Sample & xi) const ;

  /** Compute covariance matrix conditionnaly to observations*/
  virtual CovarianceMatrix getConditionalCovariance(const Point & xi) const;

  /** Compute joint normal distribution conditionnaly to observations*/
  virtual Normal operator()(const Sample & xi) const;

  /** Compute joint normal distribution conditionnaly to observations*/
  virtual Normal operator()(const Point & xi) const;

  /** Method save() stores the object through the StorageManager */
  virtual void save(Advocate & adv) const;

  /** Method load() reloads the object from the StorageManager */
  virtual void load(Advocate & adv);


protected:

  /** Compute cross matrix method ==> not necessary square matrix  */
  Matrix getCrossMatrix(const Sample & x) const;
  void computeF() const;

private:

  // Structure for evaluation of crossCovariance
  friend struct KrigingResultCrossCovarianceFunctor;

  /** inputData should be keeped*/
  Sample inputSample_;

  /** input transformed data: store data*/
  Sample inputTransformedSample_;

  Sample outputSample_;

  /** inputTransformation ==> iso-probabilistic transformation */
  Function inputTransformation_;

  /** Boolean transformation */
  Bool hasTransformation_;

  /** The trend basis */
  BasisPersistentCollection basis_;

  /** The trend coefficients */
  PointPersistentCollection trendCoefficients_;

  /** The covariance model */
  CovarianceModel covarianceModel_;

  /** The covariance coefficients */
  Sample covarianceCoefficients_;

  /** Boolean for cholesky. The factor is not mandatory (see KrigingAlgorithm) */
  Bool hasCholeskyFactor_;

  /** Cholesky factor  */
  mutable TriangularMatrix covarianceCholeskyFactor_;

  /** Cholesky factor when using hmat-oss */
  mutable HMatrix covarianceHMatrix_;

  /** Matrix F : the regression matrix */
  mutable Matrix F_;

  /** Matrix phi = L^{-1}F ==> phiT is the transposed matrix */
  mutable Matrix phiT_;

  /** Matrix F^{t}R^{-1}F writes phi_ = L^{-1}F ==> QR decomposition */
  // G_ is the triangular matrix ==> Gt the transposed
  mutable Matrix Gt_;

} ; /* class KrigingResult */


END_NAMESPACE_OPENTURNS

#endif /* OPENTURNS_KRIGINGRESULT_HXX */