/usr/include/pbbam/internal/GenomicInterval.inl is in libpbbam-dev 0.7.4+ds-1build2.
This file is owned by root:root, with mode 0o644.
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// File Description
/// \file GenomicInterval.inl
/// \brief Inline implementations for the GenomicInterval class.
//
// Author: Derek Barnett
#include "pbbam/GenomicInterval.h"
namespace PacBio {
namespace BAM {
inline GenomicInterval::~GenomicInterval(void) { }
inline std::string GenomicInterval::Name(void) const
{ return name_; }
inline GenomicInterval& GenomicInterval::Name(const std::string& name)
{ name_ = name; return *this; }
inline PacBio::BAM::Interval<Position> GenomicInterval::Interval(void) const
{ return interval_; }
inline GenomicInterval& GenomicInterval::Interval(const PacBio::BAM::Interval<Position>& interval)
{ interval_ = interval; return *this; }
inline bool GenomicInterval::IsValid(void) const
{
return !name_.empty() &&
interval_.Start() >= 0 &&
interval_.Stop() >= 0 &&
interval_.IsValid();
}
inline size_t GenomicInterval::Length(void) const
{ return interval_.Length(); }
inline Position GenomicInterval::Start(void) const
{ return interval_.Start(); }
inline GenomicInterval& GenomicInterval::Start(const Position start)
{ interval_.Start(start); return *this; }
inline Position GenomicInterval::Stop(void) const
{ return interval_.Stop(); }
inline GenomicInterval& GenomicInterval::Stop(const Position stop)
{ interval_.Stop(stop); return *this; }
inline bool GenomicInterval::operator==(const GenomicInterval& other) const
{ return name_ == other.name_ && interval_ == other.interval_; }
inline bool GenomicInterval::operator!=(const GenomicInterval& other) const
{ return !(*this == other); }
} // namespace BAM
} // namespace PacBio
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