/usr/lib/petscdir/3.7.7/x86_64-linux-gnu-real-debug/bin/TOPSGenerator.py is in libpetsc3.7.7-dbg 3.7.7+dfsg1-2build5.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
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"""
Generates the code needed to connect an application code
to the TOPS Solver Components
"""
from TOPSInstaller import *
if __name__ == '__main__':
args = []
title = "TOPS Code Generator"
message1 = """SciDAC TOPS Code Generator"""
message2 = """The DOE Mathematics SciDAC TOPS ISIC develops software for the
scalable solution of optimizations, eigenvalues and algebraic systems. More
information on TOPS may be found at http://www.tops-scidac.org. \n\n
This tool allows you to define the class of algebraic problem you are solving
and generates the appropriate "glue" code needed to use the TOPS Solver Components"""
result = buttonbox(message=message1, title=title, choices = ["Cancel", "Continue"],fontSize = 20,message2=message2)
if result == "Cancel": sys.exit()
dim = int(buttonbox(message="Dimension of the grid?", title=title, choices = ["1", "2", "3"],fontSize = 20))
lin = buttonbox(message="Type of algebraic problem?", title=title, choices = ["linear", "nonlinear"],fontSize = 20)
if lin == "nonlinear":
jac = buttonbox(message="Will you provide analytic Jacobian?", title=title, choices = ["No", "Yes"],fontSize = 20,message2="Otherwise it will be computed via finite differencing")
ig = buttonbox(message="Will you provide an initial guess?", title=title, choices = ["No","Yes"],fontSize = 20)
dof = int(enterbox("Number of degrees of freedom per grid point?",title,argDefaultText="1"))
grid = buttonbox(message="Type of grid?", title=title, choices = ["logically rectangular", "unstructured"],fontSize = 20)
if grid == "logically rectangular":
uns = "S"
staggered = buttonbox(message="Are you using a staggered grid?", title=title, choices = ["No","Yes"],fontSize = 20)
else:
uns = "Uns"
app = enterbox("Name of application?",title)
# generate the sidl
import os.path
import sys
if not os.path.isdir(app): os.mkdir(app)
f = file(os.path.join(app,app+'.sidl'), 'w')
f.write('package '+app+' version 0.0.0 {\n')
f.write(' class System implements-all TOPS.System.System,gov.cca.Component, gov.cca.ports.GoPort,\n')
f.write('TOPS.System.Initialize.Once, TOPS.System.Initialize.EverySolve,\n')
if lin == 'nonlinear':
f.write('TOPS.System.Compute.Residual')
if jac == 'yes':
f.write(',TOPS.System.Compute.Jacobian')
else:
f.write('TOPS.System.Compute.RightHandSide,')
f.write('TOPS.System.Compute.Matrix')
if ig == 'yes':
f.write(',TOPS.System.Compute.InitialGuess')
f.write('{}\n}\n')
f.close()
f = file(os.path.join(app,'makefile'),'w')
f.write('EXNAME = '+app+'\n')
f.write('SIDL = ${EXNAME}.sidl\n')
f.write('TLIBNAME = lib${EXNAME}\n')
f.write('SIDLEXCLUDE = -e TOPS[\.a-zA-Z_]* -e gov.cca[\._a-zA-Z_]*\n')
f.write('TOPSCLIENT_LIB = -L${PETSC_LIB_DIR} ${CC_LINKER_SLFLAG}${PETSC_LIB_DIR} -ltopsclient-c++\n')
f.write('DIRS = server/c++\n')
f.write('include ${PETSC_DIR}/src/tops/makefile.rules\n')
f.close()
result = buttonbox(message="Ready to generate code", title=title, choices = ["Continue"],fontSize = 20,message2="This may take several minutes.")
import commands
(status,out) = commands.getstatusoutput('cd '+app+';make server/c++/obj/makefile')
if status:
result = buttonbox(message="SIDL code generation failed", title=title, choices = ["Ok"],fontSize = 20,message2=out)
# Add the common code
f = file(os.path.join(app,'server','c++',app+'_System_Impl.cc'),'r')
text = f.read()
f.close()
bscode = 'this->solver = (TOPS::'+uns+'tructured::Solver)solver;'
text = text.replace('begin('+app+'.System.setSolver)','begin('+app+'.System.setSolver)\n'+bscode)
if dof > 1:
bscode = ' this->solver.setBlockSize('+str(dof)+');'
text = text.replace('begin('+app+'.System.initializeOnce)','begin('+app+'.System.initializeOnce)\n'+bscode)
bscode = '''TOPS::'''+uns+'''tructured::Solver solver = this->solver;'''
if grid == 'logically rectangular':
if dof > 1: sct = 1
else: sct = 0
bscode = bscode + '''
int xs = x.lower('''+str(sct)+''');
int xm = x.length('''+str(sct)+''') - 1;'''
if dim > 1:
bscode = bscode + '''
int ys = x.lower('''+str(sct+1)+''');
int ym = x.length('''+str(sct+1)+''') - 1;\n'''
if dim > 2:
bscode = bscode + '''
int zs = x.lower('''+str(sct+2)+''');
int zm = x.length('''+str(sct+2)+''') - 1;\n'''
if dim > 2:
bscode = bscode + '''for (int k=zs; k<zs+km; k++) {\n'''
if dim > 1:
bscode = bscode + '''for (int j=ys; j<ys+ym; j++) {\n'''
bscode = bscode + '''
for (int i=xs; i<xs+xm; i++) {
}'''
if dim > 2:
bscode = bscode + '''}\n'''
if dim > 1:
bscode = bscode + '''}\n'''
if lin == 'nonlinear':
text = text.replace('begin('+app+'.System.computeResidual)','begin('+app+'.System.computeResidual)\n'+bscode)
if jac == 'Yes':
text = text.replace('begin('+app+'.System.Jacobian)','begin('+app+'.System.Jacobian)\n'+bscode)
else:
text = text.replace('begin('+app+'.System.computeRightHandSide)','begin('+app+'.System.computeRightHandSide)\n'+bscode)
text = text.replace('begin('+app+'.System.computeMatrix)','begin('+app+'.System.computeMatrix)\n'+bscode)
if ig:
text = text.replace('begin('+app+'.System.initalGuess)','begin('+app+'.System.initialGuess)\n'+bscode)
bscode = '''
myServices = services;
gov::cca::TypeMap tm = services.createTypeMap();
if(tm._is_nil()) {
fprintf(stderr, "Error:: %s:%d: gov::cca::TypeMap is nil\\n",__FILE__, __LINE__);
exit(1);
}
gov::cca::Port p = self; // Babel required casting
if(p._is_nil()) {
fprintf(stderr, "Error:: %s:%d: Error casting self to gov::cca::Port \\n",__FILE__, __LINE__);
exit(1);
}
myServices.addProvidesPort(p,"TOPS.System","TOPS.System", tm);
myServices.addProvidesPort(p,"TOPS.System.Initialize.Once","TOPS.System.Initialize.Once", tm);
myServices.addProvidesPort(p,"TOPS.System.Initialize.EverySolve","TOPS.System.Initialize.EverySolve", tm);
// GoPort (instead of main)
myServices.addProvidesPort(p,"DoSolve","gov.cca.ports.GoPort",myServices.createTypeMap());
myServices.registerUsesPort("TOPS.'''+uns+'''tructured.Solver","TOPS.'''+uns+'''tructured.Solver", tm);'''
if ig:
bscode = bscode + '''myServices.addProvidesPort(p,"TOPS.System.Compute.InitialGuess","TOPS.System.Compute.InitialGuess", tm);'''
if lin == 'nonlinear':
bscode = bscode + '''myServices.addProvidesPort(p,"TOPS.System.Compute.Residual","TOPS.System.Compute.Residual", tm);'''
if jac == 'Yes':
bscode = bscode + '''myServices.addProvidesPort(p,"TOPS.System.Compute.Jacobian","TOPS.System.Compute.Jacobian", tm);'''
else:
bscode = bscode + '''myServices.addProvidesPort(p,"TOPS.System.Compute.RightHandSize","TOPS.System.Compute.RightHandSide", tm);'''
bscode = bscode + '''myServices.addProvidesPort(p,"TOPS.System.Compute.Matrix","TOPS.System.Compute.Matrix", tm);'''
text = text.replace('begin('+app+'.System.setServices)','begin('+app+'.System.setServices)\n'+bscode)
bscode = ''' int argc = 1;
char *argv[1];
argv[0] = (char*) malloc(10*sizeof(char));
strcpy(argv[0],"'''+app+'''");
this->solver = myServices.getPort("TOPS.'''+uns+'''tructured.Solver");
this->solver.Initialize(sidl::array<std::string>::create1d(argc,(const char**)argv));
this->solver.solve();
myServices.releasePort("TOPS.'''+uns+'''tructuredSolver");'''
text = text.replace('begin('+app+'.System.go)','begin('+app+'.System.go)\n'+bscode)
f = file(os.path.join(app,'server','c++',app+'_System_Impl.cc'),'w')
f.write(text)
f.close()
f = file(os.path.join(app,'server','c++',app+'_System_Impl.hh'),'r')
text = f.read()
f.close()
bscode = '''#include "TOPS.hh"'''
text = text.replace('begin('+app+'.System._includes)','begin('+app+'.System._includes)\n'+bscode)
bscode = ''' TOPS::'''+uns+'''tructured::Solver solver;
gov::cca::Services myServices;'''
text = text.replace('begin('+app+'.System._implementation)','begin('+app+'.System._implementation)\n'+bscode)
f = file(os.path.join(app,'server','c++',app+'_System_Impl.hh'),'w')
f.write(text)
f.close()
text = '''#!ccaffeine bootstrap file.
# ------- don't change anything ABOVE this line.-------------
path set '''+os.path.join('@PETSC_LIB_DIR@','cca')+'''
repository get-global TOPS.StructuredSolver
repository get-global '''+app+'''.System
instantiate TOPS.StructuredSolver solver
instantiate '''+app+'''.System system
connect solver TOPS.System.Initialize.Once system TOPS.System.Initialize.Once
connect solver TOPS.System.Initialize.EverySolve system TOPS.System.Initialize.EverySolve
connect system TOPS.Structured.Solver solver TOPS.Structured.Solver
parameter solver tops_options options "-snes_monitor -ksp_monitor"\n'''
if ig:
text = text + '''connect solver TOPS.System.Compute.InitialGuess system TOPS.System.Compute.InitialGuess\n'''
if lin == 'nonlinear''':
text = text + '''connect solver TOPS.System.Compute.Residual system TOPS.System.Compute.Residual\n'''
text = text + '''go system DoSolve
quit'''
f = file(os.path.join(app,app+'_rc.in'),'w')
f.write(text)
f.close()
result = buttonbox(message="Code generated",title=title,choices = ["Ok"],fontSize = 20,message2="Now edit "+app+"/server/c++/"+app+"_System_Impl.cc")
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