librdkit-dev 201603.5+dfsg-1ubuntu1 / usr / include / rdkit / RDGeneral / StreamOps.h

//
//  Copyright (C) 2002-2008 Greg Landrum and Rational Discovery LLC
//
//  @@ All Rights Reserved @@
//  This file is part of the RDKit.
//  The contents are covered by the terms of the BSD license
//  which is included in the file license.txt, found at the root
//  of the RDKit source tree.
//
//
#ifndef _RD_STREAMOPS_H
#define _RD_STREAMOPS_H

#include "types.h"
#include <string>
#include <sstream>
#include <iostream>
#include <boost/cstdint.hpp>
#include <boost/detail/endian.hpp>

namespace RDKit {
// this code block for handling endian problems is from :
// http://stackoverflow.com/questions/105252/how-do-i-convert-between-big-endian-and-little-endian-values-in-c
enum EEndian {
  LITTLE_ENDIAN_ORDER,
  BIG_ENDIAN_ORDER,
#if defined(BOOST_LITTLE_ENDIAN)
  HOST_ENDIAN_ORDER = LITTLE_ENDIAN_ORDER
#elif defined(BOOST_BIG_ENDIAN)
  HOST_ENDIAN_ORDER = BIG_ENDIAN_ORDER
#else
#error "Failed to determine the system endian value"
#endif
};

// this function swap the bytes of values given it's size as a template
// parameter (could sizeof be used?).
template <class T, unsigned int size>
inline T SwapBytes(T value) {
  union {
    T value;
    char bytes[size];
  } in, out;

  in.value = value;

  for (unsigned int i = 0; i < size / 2; ++i) {
    out.bytes[i] = in.bytes[size - 1 - i];
    out.bytes[size - 1 - i] = in.bytes[i];
  }

  return out.value;
}

// Here is the function you will use. Again there is two compile-time assertion
// that use the boost librarie. You could probably comment them out, but if you
// do be cautious not to use this function for anything else than integers
// types. This function need to be calles like this :
//
//     int x = someValue;
//     int i = EndianSwapBytes<HOST_ENDIAN_ORDER, BIG_ENDIAN_ORDER>(x);
//
template <EEndian from, EEndian to, class T>
inline T EndianSwapBytes(T value) {
  // A : La donnée à swapper à une taille de 2, 4 ou 8 octets
  BOOST_STATIC_ASSERT(sizeof(T) == 1 || sizeof(T) == 2 || sizeof(T) == 4 ||
                      sizeof(T) == 8);
  if (sizeof(T) == 1) return value;

  // A : La donnée à swapper est d'un type arithmetic
  // BOOST_STATIC_ASSERT(boost::is_arithmetic<T>::value);

  // Si from et to sont du même type on ne swap pas.
  if (from == to) return value;

  return SwapBytes<T, sizeof(T)>(value);
}
template <EEndian from, EEndian to>
inline char EndianSwapBytes(char value) {
  return value;
}
template <EEndian from, EEndian to>
inline unsigned char EndianSwapBytes(unsigned char value) {
  return value;
}
template <EEndian from, EEndian to>
inline signed char EndianSwapBytes(signed char value) {
  return value;
}
// --------------------------------------

//! Packs an integer and outputs it to a stream
inline void appendPackedIntToStream(std::stringstream &ss,
                                    boost::uint32_t num) {
  int nbytes, bix;
  unsigned int val, res;
  char tc;

  res = num;
  while (1) {
    if (res < (1 << 7)) {
      val = (res << 1);
      nbytes = 1;
      break;
    }
    res -= (1 << 7);
    if (res < (1 << 14)) {
      val = ((res << 2) | 1);
      nbytes = 2;
      break;
    }
    res -= (1 << 14);
    if (res < (1 << 21)) {
      val = ((res << 3) | 3);
      nbytes = 3;
      break;
    }
    res -= (1 << 21);
    if (res < (1 << 29)) {
      val = ((res << 3) | 7);
      nbytes = 4;
      break;
    } else {
      CHECK_INVARIANT(0, "ERROR: Integer too big to pack\n");
    }
  }
  // val = EndianSwapBytes<HOST_ENDIAN_ORDER,LITTLE_ENDIAN_ORDER>(val);

  for (bix = 0; bix < nbytes; bix++) {
    tc = (char)(val & 255);
    ss.write(&tc, 1);
    val >>= 8;
  }
}

//! Reads an integer from a stream in packed format and returns the result.
inline boost::uint32_t readPackedIntFromStream(std::stringstream &ss) {
  boost::uint32_t val, num;
  int shift, offset;
  char tmp;
  ss.read(&tmp, sizeof(tmp));
  val = UCHAR(tmp);
  offset = 0;
  if ((val & 1) == 0) {
    shift = 1;
  } else if ((val & 3) == 1) {
    ss.read((char *)&tmp, sizeof(tmp));
    val |= (UCHAR(tmp) << 8);
    shift = 2;
    offset = (1 << 7);
  } else if ((val & 7) == 3) {
    ss.read((char *)&tmp, sizeof(tmp));
    val |= (UCHAR(tmp) << 8);
    ss.read((char *)&tmp, sizeof(tmp));
    val |= (UCHAR(tmp) << 16);
    shift = 3;
    offset = (1 << 7) + (1 << 14);
  } else {
    ss.read((char *)&tmp, sizeof(tmp));
    val |= (UCHAR(tmp) << 8);
    ss.read((char *)&tmp, sizeof(tmp));
    val |= (UCHAR(tmp) << 16);
    ss.read((char *)&tmp, sizeof(tmp));
    val |= (UCHAR(tmp) << 24);
    shift = 3;
    offset = (1 << 7) + (1 << 14) + (1 << 21);
  }
  num = (val >> shift) + offset;
  // num = EndianSwapBytes<LITTLE_ENDIAN_ORDER,HOST_ENDIAN_ORDER>(num);
  return num;
}

//! Reads an integer from a char * in packed format and returns the result.
//!  The argument is advanced
inline boost::uint32_t pullPackedIntFromString(const char *&text) {
  boost::uint32_t val, num;
  int shift, offset;
  char tmp;
  tmp = *text;
  text++;
  val = UCHAR(tmp);
  offset = 0;
  if ((val & 1) == 0) {
    shift = 1;
  } else if ((val & 3) == 1) {
    tmp = *text;
    text++;
    val |= (UCHAR(tmp) << 8);
    shift = 2;
    offset = (1 << 7);
  } else if ((val & 7) == 3) {
    tmp = *text;
    text++;
    val |= (UCHAR(tmp) << 8);
    tmp = *text;
    text++;
    val |= (UCHAR(tmp) << 16);
    shift = 3;
    offset = (1 << 7) + (1 << 14);
  } else {
    tmp = *text;
    text++;
    val |= (UCHAR(tmp) << 8);
    tmp = *text;
    text++;
    val |= (UCHAR(tmp) << 16);
    tmp = *text;
    text++;
    val |= (UCHAR(tmp) << 24);
    shift = 3;
    offset = (1 << 7) + (1 << 14) + (1 << 21);
  }
  num = (val >> shift) + offset;
  // num = EndianSwapBytes<LITTLE_ENDIAN_ORDER,HOST_ENDIAN_ORDER>(num);
  return num;
}

//! does a binary write of an object to a stream
template <typename T>
void streamWrite(std::ostream &ss, const T &val) {
  T tval = EndianSwapBytes<HOST_ENDIAN_ORDER, LITTLE_ENDIAN_ORDER>(val);
  ss.write((const char *)&tval, sizeof(T));
}
//! does a binary read of an object from a stream
template <typename T>
void streamRead(std::istream &ss, T &loc) {
  T tloc;
  ss.read((char *)&tloc, sizeof(T));
  loc = EndianSwapBytes<LITTLE_ENDIAN_ORDER, HOST_ENDIAN_ORDER>(tloc);
}

//! grabs the next line from an instream and returns it.
inline std::string getLine(std::istream *inStream) {
  std::string res;
  std::getline(*inStream, res);
  if ((res.length() > 0) && (res[res.length() - 1] == '\r')) {
    res.erase(res.length() - 1);
  }
  return res;
}
//! grabs the next line from an instream and returns it.
inline std::string getLine(std::istream &inStream) {
  return getLine(&inStream);
}
}

#endif