/usr/include/rheolef/scatter_message.icc is in librheolef-dev 6.7-6.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 | #ifndef _RHEOLEF_SCATTER_MESSAGE_ICC
#define _RHEOLEF_SCATTER_MESSAGE_ICC
///
/// This file is part of Rheolef.
///
/// Copyright (C) 2000-2009 Pierre Saramito <Pierre.Saramito@imag.fr>
///
/// Rheolef is free software; you can redistribute it and/or modify
/// it under the terms of the GNU General Public License as published by
/// the Free Software Foundation; either version 2 of the License, or
/// (at your option) any later version.
///
/// Rheolef is distributed in the hope that it will be useful,
/// but WITHOUT ANY WARRANTY; without even the implied warranty of
/// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
/// GNU General Public License for more details.
///
/// You should have received a copy of the GNU General Public License
/// along with Rheolef; if not, write to the Free Software
/// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
///
/// =========================================================================
//
// create distributed to sequential scatter context
// inspirated from petsc-2.0/vpscat.c: VecScatterCreate_PtoS(...)
//
#include "rheolef/compiler.h"
#ifdef _RHEOLEF_HAVE_MPI
#include "rheolef/scatter_message.h"
#include "rheolef/msg_left_permutation_apply.h"
#include "rheolef/msg_right_permutation_apply.h"
namespace rheolef {
// =================================================================================
// part 1: init
// =================================================================================
// case of multi-valued data:
// called after the scatter_message<Container,false> scatter is finished:
// => the size of each object to transmit is known
template<class Container>
void
scatter_message<Container,true>::multi_init ()
{
// ----------------------------------------------
// 1) count the total message size
// ----------------------------------------------
size_type n_data = base::n_data();
_ptr.resize (n_data+1);
_ptr [0] = 0;
for (size_type i = 0; i < n_data; i++) {
size_type size_i = base::_values [i];
_ptr [i+1] = _ptr[i] + size_i;
}
size_type n_multi_data = _ptr[n_data];
// ----------------------------------------------
// 2) resize & fill multi_{values,indices} arrays
// ----------------------------------------------
_multi_values.resize (n_multi_data);
#ifdef TO_CLEAN
_multi_indices.resize (n_multi_data);
typename std::vector<size_type>::const_iterator p = base::_indices.begin();
std::vector<size_type> ip (n_data);
for (size_type i = 0; i < n_data; i++) {
ip[p[i]] = i;
}
// y[p[i]] == x[i] <==> x[ip[j]] == y[j]
// yptr[j]... yptr[j+1]-1 = range of multi-valued y[j]==x[i], j=p[i]
std::vector<size_type> yptr (n_data+1);
yptr [0] = 0;
for (size_type j = 0; j < n_data; j++) {
size_type size_j = base::_values [ip[j]];
yptr[j+1] = yptr[j] + size_j;
}
for (size_type i = 0; i < n_data; i++) {
size_type size_i = base::_values [i];
size_type j = _ptr[i];
for (size_type k = 0; k < size_i; j++) {
_multi_indices [yptr[j]+k] = _ptr[i] + k;
}
}
#endif // TO_CLEAN
// --------------------------------------------
// 3) eliminate zero-sized multi-messages
// --------------------------------------------
// some values could asked for send/receive could be empty set, so
// the multi_nproc of send/receive could be < nproc for sizes
// => check for empty messages, i.e. with zero-sized multi-valued containers(set,list,..)
// and MPI waits infinitely for empty messages to arrive...
size_type nproc = base::_procs.size();
std::vector<size_type> msg_size (nproc, 0);
size_type multi_nproc = 0;
for (size_type iproc = 0; iproc < nproc; iproc++) {
for (size_type i = base::_starts[iproc],
last_i = base::_starts[iproc+1]; i < last_i; i++) {
size_type size_i = base::_values [i];
msg_size[iproc] += size_i;
}
if (msg_size[iproc] != 0) {
multi_nproc++;
}
}
// --------------------------------------------
// 4) resize & fill multi_{procs,starts} arrays
// --------------------------------------------
_multi_procs.resize (multi_nproc);
_multi_starts.resize (multi_nproc+1);
_multi_irecv2base_irecv.resize (multi_nproc);
_multi_starts [0] = 0;
for (size_type iproc = 0, multi_iproc = 0; iproc < nproc; iproc++) {
if (msg_size[iproc] == 0) continue;
_multi_procs [multi_iproc] = base::_procs [iproc];
_multi_starts [multi_iproc+1] = _multi_starts [multi_iproc] + msg_size[iproc];
_multi_irecv2base_irecv [multi_iproc] = iproc;
multi_iproc++;
}
}
// =================================================================================
// part 2: load and store
// =================================================================================
// values[i] = x[indices[i]], i=[0..n_data[
template<class Container>
template<class InputIterator>
void
scatter_message<Container,false>::load_values (InputIterator x)
{
msg_right_permutation_apply (
_indices.begin(),
_indices.end(),
x,
_values.begin());
}
// the same with multi-valued data:
template<class Container>
template<class InputIterator>
void
scatter_message<Container,true>::load_values (InputIterator x)
{
for (size_type i = 0, n_data = base::_indices.size(), z = 0; i < n_data; i++) {
size_type pi = base::_indices[i];
for (typename value_type::const_iterator first = x[pi].begin(), last = x[pi].end(); first != last; first++, z++) {
_multi_values [z] = *first;
}
}
}
// y[indices[i]] = value[i], i=[start(i_recv)..starts(i_recv+1)[
template<class Container>
template<class OutputIterator, class SetOp>
void
scatter_message<Container,false>::store_values (OutputIterator y, size_type i_recv, SetOp op) const
{
msg_left_permutation_apply (
_values.begin() + _starts[i_recv],
op,
_indices.begin() + _starts[i_recv],
_indices.begin() + _starts[i_recv+1],
y);
}
// the same with multi-valued data:
template<class Container>
template<class OutputIterator, class SetOp>
void
scatter_message<Container,true>::store_values (OutputIterator y, size_type i_multi_recv, SetOp op) const
{
size_type i_recv = _multi_irecv2base_irecv [i_multi_recv];
for (size_type i = base::_starts[i_recv], n_data = base::_starts[i_recv+1]; i < n_data; i++) {
size_type pi = base::_indices[i];
for (size_type z = _ptr[i], last_z = _ptr[i+1]; z < last_z; z++) {
y[pi] += _multi_values [z];
}
}
}
} // namespace rheolef
#endif // _RHEOLEF_HAVE_MPI
#endif // _RHEOLEF_SCATTER_MESSAGE_ICC
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