This file is indexed.

/usr/include/sbml/Constraint.h is in libsbml5-dev 5.16.0+dfsg-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

   1
   2
   3
   4
   5
   6
   7
   8
   9
  10
  11
  12
  13
  14
  15
  16
  17
  18
  19
  20
  21
  22
  23
  24
  25
  26
  27
  28
  29
  30
  31
  32
  33
  34
  35
  36
  37
  38
  39
  40
  41
  42
  43
  44
  45
  46
  47
  48
  49
  50
  51
  52
  53
  54
  55
  56
  57
  58
  59
  60
  61
  62
  63
  64
  65
  66
  67
  68
  69
  70
  71
  72
  73
  74
  75
  76
  77
  78
  79
  80
  81
  82
  83
  84
  85
  86
  87
  88
  89
  90
  91
  92
  93
  94
  95
  96
  97
  98
  99
 100
 101
 102
 103
 104
 105
 106
 107
 108
 109
 110
 111
 112
 113
 114
 115
 116
 117
 118
 119
 120
 121
 122
 123
 124
 125
 126
 127
 128
 129
 130
 131
 132
 133
 134
 135
 136
 137
 138
 139
 140
 141
 142
 143
 144
 145
 146
 147
 148
 149
 150
 151
 152
 153
 154
 155
 156
 157
 158
 159
 160
 161
 162
 163
 164
 165
 166
 167
 168
 169
 170
 171
 172
 173
 174
 175
 176
 177
 178
 179
 180
 181
 182
 183
 184
 185
 186
 187
 188
 189
 190
 191
 192
 193
 194
 195
 196
 197
 198
 199
 200
 201
 202
 203
 204
 205
 206
 207
 208
 209
 210
 211
 212
 213
 214
 215
 216
 217
 218
 219
 220
 221
 222
 223
 224
 225
 226
 227
 228
 229
 230
 231
 232
 233
 234
 235
 236
 237
 238
 239
 240
 241
 242
 243
 244
 245
 246
 247
 248
 249
 250
 251
 252
 253
 254
 255
 256
 257
 258
 259
 260
 261
 262
 263
 264
 265
 266
 267
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279
 280
 281
 282
 283
 284
 285
 286
 287
 288
 289
 290
 291
 292
 293
 294
 295
 296
 297
 298
 299
 300
 301
 302
 303
 304
 305
 306
 307
 308
 309
 310
 311
 312
 313
 314
 315
 316
 317
 318
 319
 320
 321
 322
 323
 324
 325
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336
 337
 338
 339
 340
 341
 342
 343
 344
 345
 346
 347
 348
 349
 350
 351
 352
 353
 354
 355
 356
 357
 358
 359
 360
 361
 362
 363
 364
 365
 366
 367
 368
 369
 370
 371
 372
 373
 374
 375
 376
 377
 378
 379
 380
 381
 382
 383
 384
 385
 386
 387
 388
 389
 390
 391
 392
 393
 394
 395
 396
 397
 398
 399
 400
 401
 402
 403
 404
 405
 406
 407
 408
 409
 410
 411
 412
 413
 414
 415
 416
 417
 418
 419
 420
 421
 422
 423
 424
 425
 426
 427
 428
 429
 430
 431
 432
 433
 434
 435
 436
 437
 438
 439
 440
 441
 442
 443
 444
 445
 446
 447
 448
 449
 450
 451
 452
 453
 454
 455
 456
 457
 458
 459
 460
 461
 462
 463
 464
 465
 466
 467
 468
 469
 470
 471
 472
 473
 474
 475
 476
 477
 478
 479
 480
 481
 482
 483
 484
 485
 486
 487
 488
 489
 490
 491
 492
 493
 494
 495
 496
 497
 498
 499
 500
 501
 502
 503
 504
 505
 506
 507
 508
 509
 510
 511
 512
 513
 514
 515
 516
 517
 518
 519
 520
 521
 522
 523
 524
 525
 526
 527
 528
 529
 530
 531
 532
 533
 534
 535
 536
 537
 538
 539
 540
 541
 542
 543
 544
 545
 546
 547
 548
 549
 550
 551
 552
 553
 554
 555
 556
 557
 558
 559
 560
 561
 562
 563
 564
 565
 566
 567
 568
 569
 570
 571
 572
 573
 574
 575
 576
 577
 578
 579
 580
 581
 582
 583
 584
 585
 586
 587
 588
 589
 590
 591
 592
 593
 594
 595
 596
 597
 598
 599
 600
 601
 602
 603
 604
 605
 606
 607
 608
 609
 610
 611
 612
 613
 614
 615
 616
 617
 618
 619
 620
 621
 622
 623
 624
 625
 626
 627
 628
 629
 630
 631
 632
 633
 634
 635
 636
 637
 638
 639
 640
 641
 642
 643
 644
 645
 646
 647
 648
 649
 650
 651
 652
 653
 654
 655
 656
 657
 658
 659
 660
 661
 662
 663
 664
 665
 666
 667
 668
 669
 670
 671
 672
 673
 674
 675
 676
 677
 678
 679
 680
 681
 682
 683
 684
 685
 686
 687
 688
 689
 690
 691
 692
 693
 694
 695
 696
 697
 698
 699
 700
 701
 702
 703
 704
 705
 706
 707
 708
 709
 710
 711
 712
 713
 714
 715
 716
 717
 718
 719
 720
 721
 722
 723
 724
 725
 726
 727
 728
 729
 730
 731
 732
 733
 734
 735
 736
 737
 738
 739
 740
 741
 742
 743
 744
 745
 746
 747
 748
 749
 750
 751
 752
 753
 754
 755
 756
 757
 758
 759
 760
 761
 762
 763
 764
 765
 766
 767
 768
 769
 770
 771
 772
 773
 774
 775
 776
 777
 778
 779
 780
 781
 782
 783
 784
 785
 786
 787
 788
 789
 790
 791
 792
 793
 794
 795
 796
 797
 798
 799
 800
 801
 802
 803
 804
 805
 806
 807
 808
 809
 810
 811
 812
 813
 814
 815
 816
 817
 818
 819
 820
 821
 822
 823
 824
 825
 826
 827
 828
 829
 830
 831
 832
 833
 834
 835
 836
 837
 838
 839
 840
 841
 842
 843
 844
 845
 846
 847
 848
 849
 850
 851
 852
 853
 854
 855
 856
 857
 858
 859
 860
 861
 862
 863
 864
 865
 866
 867
 868
 869
 870
 871
 872
 873
 874
 875
 876
 877
 878
 879
 880
 881
 882
 883
 884
 885
 886
 887
 888
 889
 890
 891
 892
 893
 894
 895
 896
 897
 898
 899
 900
 901
 902
 903
 904
 905
 906
 907
 908
 909
 910
 911
 912
 913
 914
 915
 916
 917
 918
 919
 920
 921
 922
 923
 924
 925
 926
 927
 928
 929
 930
 931
 932
 933
 934
 935
 936
 937
 938
 939
 940
 941
 942
 943
 944
 945
 946
 947
 948
 949
 950
 951
 952
 953
 954
 955
 956
 957
 958
 959
 960
 961
 962
 963
 964
 965
 966
 967
 968
 969
 970
 971
 972
 973
 974
 975
 976
 977
 978
 979
 980
 981
 982
 983
 984
 985
 986
 987
 988
 989
 990
 991
 992
 993
 994
 995
 996
 997
 998
 999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
/**
 * @file    Constraint.h
 * @brief   Definitions of Constraint and ListOfConstraints.
 * @author  Ben Bornstein
 * 
 * <!--------------------------------------------------------------------------
 * This file is part of libSBML.  Please visit http://sbml.org for more
 * information about SBML, and the latest version of libSBML.
 *
 * Copyright (C) 2013-2017 jointly by the following organizations:
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
 *     3. University of Heidelberg, Heidelberg, Germany
 *
 * Copyright (C) 2009-2013 jointly by the following organizations: 
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
 *  
 * Copyright (C) 2006-2008 by the California Institute of Technology,
 *     Pasadena, CA, USA 
 *  
 * Copyright (C) 2002-2005 jointly by the following organizations: 
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. Japan Science and Technology Agency, Japan
 * 
 * This library is free software; you can redistribute it and/or modify it
 * under the terms of the GNU Lesser General Public License as published by
 * the Free Software Foundation.  A copy of the license agreement is provided
 * in the file named "LICENSE.txt" included with this software distribution
 * and also available online as http://sbml.org/software/libsbml/license.html
 * ------------------------------------------------------------------------ -->
 *
 * @class Constraint
 * @sbmlbrief{core} An SBML <em>constraint</em>, for stating validity assumptions.
 *
 * The Constraint object class was introduced in SBML Level&nbsp;2
 * Version&nbsp;2 as a mechanism for stating the assumptions under which a
 * model is designed to operate.  The <em>constraints</em> are statements
 * about permissible values of different quantities in a model.
 * Constraints are not used to compute dynamical values for simulation or
 * analysis, but rather, they serve an advisory role for
 * simulation/analysis tools.
 *
 * SBML's Constraint object class has one required attribute, "id", to
 * give the parameter a unique identifier by which other parts of an SBML
 * model definition can refer to it.  A Constraint object can also have an
 * optional "name" attribute of type @c string.  Identifiers and names must
 * be used according to the guidelines described in the SBML specification
 * (e.g., Section 3.3 in the Level&nbsp;2 Version 4 specification).  
 *
 * Constraint has one subelement, "math", containing a MathML
 * formula defining the condition of the constraint.  This formula will
 * return a Boolean value of @c true when the model is a <em>valid</em>
 * state.  The formula can be an arbitrary expression referencing the
 * variables and other entities in an SBML model.  The evaluation of "math"
 * and behavior of constraints are described in more detail below.
 *
 * In SBML Level&nbsp;2 and SBML Level&nbsp;3 Version&nbsp;1, the "math"
 * subelement is required, and its formula must be a Boolean value.  In
 * SBML Level&nbsp;3 Version&nbsp;2, these restrictions were relaxed:
 * the "math" subelement is optional, and numeric values are allowed
 * in Boolean contexts (a '0' is interpreted as @c false, and all other
 * values are interpreted as @c true).  If a Constraint with no "math"
 * is present in a Model, no restriction on the Model's behavior is
 * implied or enforced.
 *
 * A Constraint structure also has an optional subelement called "message".
 * This can contain a message in XHTML format that may be displayed to the
 * user when the condition of the formula in the "math" subelement
 * evaluates to a value of @c false.  Software tools are not required to
 * display the message, but it is recommended that they do so as a matter
 * of best practice.  The XHTML content within a "message" subelement must
 * follow the same restrictions as for the "notes" element on SBase
 * described in in the SBML Level&nbsp;2 specification; please consult the
 * <a target="_blank" href="http://sbml.org/Documents/Specifications">SBML
 * specification document</a> corresponding to the SBML Level and Version
 * of your model for more information about the requirements for "notes"
 * content.
 *
 * Constraint was introduced in SBML Level&nbsp;2 Version&nbsp;2.  It is
 * not available in earlier versions of Level&nbsp;2 nor in any version of
 * Level&nbsp;1.
 *
 * @section constraint-semantics Semantics of Constraints
 * 
 * In the context of a simulation, a Constraint has effect at all times
 * <em>t \f$\geq\f$ 0</em>.  Each Constraint's "math" subelement is first
 * evaluated after any InitialAssignment definitions in a model at <em>t =
 * 0</em> and can conceivably trigger at that point.  (In other words, a
 * simulation could fail a constraint immediately.)
 *
 * Constraint structures <em>cannot and should not</em> be used to compute
 * the dynamical behavior of a model as part of, for example, simulation.
 * Constraints may be used as input to non-dynamical analysis, for instance
 * by expressing flux constraints for flux balance analysis.
 *
 * The results of a simulation of a model containing a constraint are
 * invalid from any simulation time at and after a point when the function
 * given by the "math" subelement returns a value of @c false.  Invalid
 * simulation results do not make a prediction of the behavior of the
 * biochemical reaction network represented by the model.  The precise
 * behavior of simulation tools is left undefined with respect to
 * constraints.  If invalid results are detected with respect to a given
 * constraint, the "message" subelement may optionally be displayed to the
 * user.  The simulation tool may also halt the simulation or clearly
 * delimit in output data the simulation time point at which the simulation
 * results become invalid.
 *
 * SBML does not impose restrictions on duplicate Constraint definitions or
 * the order of evaluation of Constraint objects in a model.  It is
 * possible for a model to define multiple constraints all with the same
 * mathematical expression.  Since the failure of any constraint indicates
 * that the model simulation has entered an invalid state, a system is not
 * required to attempt to detect whether other constraints in the model
 * have failed once any one constraint has failed.
 *
 * <!---------------------------------------------------------------------- -->
 *
 * @class ListOfConstraints
 * @sbmlbrief{core} A list of Constraint objects.
 * 
 * @copydetails doc_what_is_listof
 */

#ifndef Constraint_h
#define Constraint_h


#include <sbml/common/extern.h>
#include <sbml/common/sbmlfwd.h>


#ifdef __cplusplus


#include <string>

#include <sbml/SBase.h>
#include <sbml/ListOf.h>

LIBSBML_CPP_NAMESPACE_BEGIN

class ASTNode;
class XMLNode;
class SBMLVisitor;


class LIBSBML_EXTERN Constraint : public SBase
{
public:

  /**
   * Creates a new Constraint using the given SBML @p level and @p version
   * values.
   *
   * @param level an unsigned int, the SBML Level to assign to this Constraint.
   *
   * @param version an unsigned int, the SBML Version to assign to this
   * Constraint.
   *
   * @copydetails doc_throw_exception_lv
   *
   * @copydetails doc_note_setting_lv
   */
  Constraint (unsigned int level, unsigned int version);


  /**
   * Creates a new Constraint using the given SBMLNamespaces object
   * @p sbmlns.
   *
   * @copydetails doc_what_are_sbmlnamespaces
   *
   * @param sbmlns an SBMLNamespaces object.
   *
   * @copydetails doc_throw_exception_namespace
   *
   * @copydetails doc_note_setting_lv
   */
  Constraint (SBMLNamespaces* sbmlns);


  /**
   * Destroys this Constraint.
   */
  virtual ~Constraint ();


  /**
   * Copy constructor; creates a copy of this Constraint.
   *
   * @param orig the object to copy.
   */
  Constraint (const Constraint& orig);


  /**
   * Assignment operator for Constraint.
   *
   * @param rhs the object whose values are used as the basis of the
   * assignment.
   */
  Constraint& operator=(const Constraint& rhs);


  /** @cond doxygenLibsbmlInternal */
  /**
   * Accepts the given SBMLVisitor for this instance of Constraint.
   *
   * @param v the SBMLVisitor instance to be used.
   *
   * @return the result of calling <code>v.visit()</code>, which indicates
   * whether the Visitor would like to visit the next Constraint in the
   * list of constraints within which this Constraint is embedded (i.e., in
   * the ListOfConstraints located in the enclosing Model instance).
   */
  virtual bool accept (SBMLVisitor& v) const;
  /** @endcond */


  /**
   * Creates and returns a deep copy of this Constraint object.
   *
   * @return the (deep) copy of this Constraint object.
   */
  virtual Constraint* clone () const;


  /**
   * Get the message, if any, associated with this Constraint
   * 
   * @return the message for this Constraint, as an XMLNode.
   */
  const XMLNode* getMessage () const;


  /**
   * Get the message string, if any, associated with this Constraint
   * 
   * @return the message for this Constraint, as a string.
   */
  virtual std::string getMessageString () const;


  /**
   * Get the mathematical expression of this Constraint
   * 
   * @return the math for this Constraint, as an ASTNode, or @c NULL if the math is not set.
   */
  virtual const ASTNode* getMath () const;


  /**
   * Predicate returning @c true if a
   * message is defined for this Constraint.
   *
   * @return @c true if the message of this Constraint is set,
   * @c false otherwise.
   */
  bool isSetMessage () const;


  /**
   * Predicate returning @c true if a
   * mathematical formula is defined for this Constraint.
   *
   * @return @c true if the "math" subelement for this Constraint is
   * set, @c false otherwise.
   */
  bool isSetMath () const;


  /**
   * Sets the message of this Constraint.
   *
   * The XMLNode tree passed in @p xhtml is copied.
   *
   * @param xhtml an XML tree containing XHTML content.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
   */
  int setMessage (const XMLNode* xhtml);


  /**
   * Sets the message of this Constraint.
   *
   * @param message an XML string that is to be used as the content of the
   * "message" subelement of this object.
   *
   * @param addXHTMLMarkup a boolean indicating whether to wrap the contents
   * of the @p message argument with XHTML paragraph (<code>&lt;p&gt;</code>)
   * tags.  This is appropriate when the string in @p message does not already
   * containg the appropriate XHTML markup.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
   */
  virtual int setMessage (const std::string& message, bool addXHTMLMarkup = false);


  /**
   * Sets the mathematical expression of this Constraint to a copy of the
   * AST given as @p math.
   *
   * @param math an ASTNode expression to be assigned as the "math"
   * subelement of this Constraint.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
   */
  virtual int setMath (const ASTNode* math);


  /**
   * Unsets the "message" subelement of this Constraint.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  int unsetMessage ();


  /**
   * @copydoc doc_renamesidref_common
   */
  virtual void renameSIdRefs(const std::string& oldid, const std::string& newid);


  /**
   * @copydoc doc_renameunitsidref_common
   */
  virtual void renameUnitSIdRefs(const std::string& oldid, const std::string& newid);


  /** @cond doxygenLibsbmlInternal */
  /**
   * Replace all nodes with the name 'id' from the child 'math' object with the provided function. 
   *
   */
  virtual void replaceSIDWithFunction(const std::string& id, const ASTNode* function);
  /** @endcond */


  /**
   * Returns the libSBML type code for this SBML object.
   * 
   * @copydetails doc_what_are_typecodes
   *
   * @return the SBML type code for this object:
   * @sbmlconstant{SBML_CONSTRAINT, SBMLTypeCode_t} (default).
   *
   * @copydetails doc_warning_typecodes_not_unique
   *
   * @see getElementName()
   * @see getPackageName()
   */
  virtual int getTypeCode () const;


  /**
   * Returns the XML element name of this object, which for Constraint, is
   * always @c "constraint".
   * 
   * @return the name of this element, i.e., @c "constraint".
   */
  virtual const std::string& getElementName () const;


  /** @cond doxygenLibsbmlInternal */
  /**
   * Subclasses should override this method to write out their contained
   * SBML objects as XML elements.  Be sure to call your parent's
   * implementation of this method as well.
   */
  virtual void writeElements (XMLOutputStream& stream) const;
  /** @endcond */


  /**
   * Predicate returning @c true if
   * all the required elements for this Constraint object
   * have been set.
   *
   * @note The required elements for a Constraint object are:
   * @li 'math' (through SBML Level&nbsp;3 Version&nbsp;1 only; not 
   *     required in Level&nbsp;3 Version&nbsp;2+.)
   *
   * @return a boolean value indicating whether all the required
   * elements for this object have been defined.
   */
  virtual bool hasRequiredElements() const;




  #ifndef SWIG



  /** @cond doxygenLibsbmlInternal */

  /**
   * Gets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to retrieve.
   *
   * @param value, the address of the value to record.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int getAttribute(const std::string& attributeName, bool& value)
    const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Gets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to retrieve.
   *
   * @param value, the address of the value to record.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int getAttribute(const std::string& attributeName, int& value) const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Gets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to retrieve.
   *
   * @param value, the address of the value to record.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int getAttribute(const std::string& attributeName,
                           double& value) const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Gets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to retrieve.
   *
   * @param value, the address of the value to record.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int getAttribute(const std::string& attributeName,
                           unsigned int& value) const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Gets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to retrieve.
   *
   * @param value, the address of the value to record.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int getAttribute(const std::string& attributeName,
                           std::string& value) const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Gets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to retrieve.
   *
   * @param value, the address of the value to record.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int getAttribute(const std::string& attributeName,
                           const char* value) const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Predicate returning @c true if this Constraint's attribute "attributeName"
   * is set.
   *
   * @param attributeName, the name of the attribute to query.
   *
   * @return @c true if this Constraint's attribute "attributeName" has been
   * set, otherwise @c false is returned.
   */
  virtual bool isSetAttribute(const std::string& attributeName) const;

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Sets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to set.
   *
   * @param value, the value of the attribute to set.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int setAttribute(const std::string& attributeName, bool value);

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Sets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to set.
   *
   * @param value, the value of the attribute to set.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int setAttribute(const std::string& attributeName, int value);

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Sets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to set.
   *
   * @param value, the value of the attribute to set.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int setAttribute(const std::string& attributeName, double value);

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Sets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to set.
   *
   * @param value, the value of the attribute to set.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int setAttribute(const std::string& attributeName,
                           unsigned int value);

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Sets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to set.
   *
   * @param value, the value of the attribute to set.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int setAttribute(const std::string& attributeName,
                           const std::string& value);

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Sets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to set.
   *
   * @param value, the value of the attribute to set.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int setAttribute(const std::string& attributeName, const char*
    value);

  /** @endcond */



  /** @cond doxygenLibsbmlInternal */

  /**
   * Unsets the value of the "attributeName" attribute of this Constraint.
   *
   * @param attributeName, the name of the attribute to query.
   *
   * @copydetails doc_returns_success_code
   * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
   * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
   */
  virtual int unsetAttribute(const std::string& attributeName);

  /** @endcond */




  #endif /* !SWIG */

  /** @cond doxygenLibsbmlInternal */
  /*
  * Function to set/get an identifier for unit checking
  */
  std::string getInternalId() const;
  void setInternalId(std::string id);

  /** @endcond */


protected:
  /** @cond doxygenLibsbmlInternal */
  /**
   * Subclasses should override this method to read (and store) XHTML,
   * MathML, etc. directly from the XMLInputStream.
   *
   * @return @c true if the subclass read from the stream, @c false otherwise.
   */
  virtual bool readOtherXML (XMLInputStream& stream);


  /**
   * Subclasses should override this method to get the list of
   * expected attributes.
   * This function is invoked from corresponding readAttributes()
   * function.
   */
  virtual void addExpectedAttributes(ExpectedAttributes& attributes);


  /**
   * Subclasses should override this method to read values from the given
   * XMLAttributes set into their specific fields.  Be sure to call your
   * parent's implementation of this method as well.
   */
  virtual void readAttributes (const XMLAttributes& attributes,
                               const ExpectedAttributes& expectedAttributes);

  void readL2Attributes (const XMLAttributes& attributes);
  
  void readL3Attributes (const XMLAttributes& attributes);


  /**
   * Subclasses should override this method to write their XML attributes
   * to the XMLOutputStream.  Be sure to call your parent's implementation
   * of this method as well.
   */
  virtual void writeAttributes (XMLOutputStream& stream) const;


  ASTNode* mMath;
  XMLNode* mMessage;
  /* internal id used by unit checking */
  std::string mInternalId;

  /* the validator classes need to be friends to access the 
   * protected constructor that takes no arguments
   */
  friend class Validator;
  friend class ConsistencyValidator;
  friend class IdentifierConsistencyValidator;
  friend class InternalConsistencyValidator;
  friend class L1CompatibilityValidator;
  friend class L2v1CompatibilityValidator;
  friend class L2v2CompatibilityValidator;
  friend class L2v3CompatibilityValidator;
  friend class L2v4CompatibilityValidator;
  friend class MathMLConsistencyValidator;
  friend class ModelingPracticeValidator;
  friend class OverdeterminedValidator;
  friend class SBOConsistencyValidator;
  friend class UnitConsistencyValidator;

  /** @endcond */
};



class LIBSBML_EXTERN ListOfConstraints : public ListOf
{
public:

  /**
   * Creates a new ListOfConstraints object.
   *
   * The object is constructed such that it is valid for the given SBML
   * Level and Version combination.
   *
   * @param level the SBML Level.
   * 
   * @param version the Version within the SBML Level.
   *
   * @copydetails doc_throw_exception_lv
   *
   * @copydetails doc_note_setting_lv
   */
  ListOfConstraints (unsigned int level, unsigned int version);
          

  /**
   * Creates a new ListOfConstraints object.
   *
   * The object is constructed such that it is valid for the SBML Level and
   * Version combination determined by the SBMLNamespaces object in @p
   * sbmlns.
   *
   * @param sbmlns an SBMLNamespaces object that is used to determine the
   * characteristics of the ListOfConstraints object to be created.
   *
   * @copydetails doc_throw_exception_namespace
   *
   * @copydetails doc_note_setting_lv
   */
  ListOfConstraints (SBMLNamespaces* sbmlns);


  /**
   * Creates and returns a deep copy of this ListOfConstraints object.
   *
   * @return the (deep) copy of this ListOfConstraints object.
   */
  virtual ListOfConstraints* clone () const;


  /**
   * Returns the libSBML type code for the objects contained in this ListOf
   * (i.e., Constraint objects, if the list is non-empty).
   *
   * @copydetails doc_what_are_typecodes
   * 
   * @return the SBML type code for the objects contained in this ListOf
   * instance: @sbmlconstant{SBML_CONSTRAINT, SBMLTypeCode_t} (default).
   *
   * @see getElementName()
   * @see getPackageName()
   */
  virtual int getItemTypeCode () const;


  /**
   * Returns the XML element name of this object.
   *
   * For ListOfConstraints, the XML element name is @c "listOfConstraints".
   * 
   * @return the name of this element.
   */
  virtual const std::string& getElementName () const;


  /**
   * Get a Constraint from the ListOfConstraints.
   *
   * @param n the index number of the Constraint to get.
   * 
   * @return the nth Constraint in this ListOfConstraints.
   *
   * @see size()
   */
  virtual Constraint * get(unsigned int n); 


  /**
   * Get a Constraint from the ListOfConstraints.
   *
   * @param n the index number of the Constraint to get.
   * 
   * @return the nth Constraint in this ListOfConstraints.
   *
   * @see size()
   */
  virtual const Constraint * get(unsigned int n) const; 


  /**
   * Removes the nth item from this ListOfConstraints items and returns a
   * pointer to it.
   *
   * The caller owns the returned item and is responsible for deleting it.
   *
   * @param n the index of the item to remove.
   *
   * @see size()
   */
  virtual Constraint* remove (unsigned int n);


  /** @cond doxygenLibsbmlInternal */
  /**
   * Get the ordinal position of this element in the containing object
   * (which in this case is the Model object).
   *
   * The ordering of elements in the XML form of SBML is generally fixed
   * for most components in SBML.  So, for example, the ListOfConstraints
   * in a model is (in SBML Level&nbsp;2 Version 4) the tenth ListOf___.
   * (However, it differs for different Levels and Versions of SBML.)
   *
   * @return the ordinal position of the element with respect to its
   * siblings, or @c -1 (default) to indicate the position is not significant.
   */
  virtual int getElementPosition () const;

  /** @endcond */


protected:
  /** @cond doxygenLibsbmlInternal */
  /**
   * Create and return an SBML object of this class, if present.
   *
   * @return the SBML object corresponding to next XMLToken in the
   * XMLInputStream or @c NULL if the token was not recognized.
   */
  virtual SBase* createObject (XMLInputStream& stream);

  /** @endcond */
};

LIBSBML_CPP_NAMESPACE_END

#endif  /* __cplusplus */


#ifndef SWIG

LIBSBML_CPP_NAMESPACE_BEGIN
BEGIN_C_DECLS

/**
 * Creates a new Constraint_t structure using the given SBML @p level
 * and @p version values.
 *
 * @param level an unsigned int, the SBML Level to assign to this
 * Constraint_t.
 *
 * @param version an unsigned int, the SBML Version to assign to this
 * Constraint_t.
 *
 * @return a pointer to the newly created Constraint_t structure.
 *
 * @copydetails doc_note_setting_lv
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
Constraint_t *
Constraint_create (unsigned int level, unsigned int version);


/**
 * Creates a new Constraint_t structure using the given
 * SBMLNamespaces_t structure.
 *
 * @param sbmlns SBMLNamespaces_t, a pointer to an SBMLNamespaces_t structure
 * to assign to this Constraint_t.
 *
 * @return a pointer to the newly created Constraint_t structure.
 *
 * @copydetails doc_note_setting_lv
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
Constraint_t *
Constraint_createWithNS (SBMLNamespaces_t *sbmlns);


/**
 * Frees the given Constraint_t structure.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
void
Constraint_free (Constraint_t *c);


/**
 * Creates and returns a deep copy of the given Constraint_t structure.
 *
 * @param c the Constraint_t structure to copy.
 * 
 * @return a (deep) copy of Constraint_t.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
Constraint_t *
Constraint_clone (const Constraint_t *c);


/**
 * Returns a list of XMLNamespaces_t associated with this Constraint_t
 * structure.
 *
 * @param c the Constraint_t structure.
 * 
 * @return pointer to the XMLNamespaces_t structure associated with 
 * this structure
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
const XMLNamespaces_t *
Constraint_getNamespaces(Constraint_t *c);


/**
 * Get the message, if any, associated with this Constraint_t
 *
 * @param c the Constraint_t structure.
 * 
 * @return the message for this Constraint_t, as an XMLNode_t.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
const XMLNode_t *
Constraint_getMessage (const Constraint_t *c);


/**
 * Get the message string, if any, associated with this Constraint_t
 *
 * @param c the Constraint_t structure.
 * 
 * @return the message for this Constraint_t, as a string (char*).
 * @c NULL is returned if the message is not set.
 *
 * @note returned char* should be freed with safe_free() by the caller.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
char*
Constraint_getMessageString (const Constraint_t *c);


/**
 * Get the mathematical expression of this Constraint_t
 *
 * @param c the Constraint_t structure.
 * 
 * @return the math for this Constraint_t, as an ASTNode_t.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
const ASTNode_t *
Constraint_getMath (const Constraint_t *c);


/**
 * Predicate returning @c 1 (true) or @c 0 (false) depending on whether a
 * message is defined for this Constraint_t.
 *
 * @param c the Constraint_t structure.
 * 
 * @return @c 1 (true) if the "message" subelement for this
 * Constraint_t is set, @c 0 (false) otherwise.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
int
Constraint_isSetMessage (const Constraint_t *c);


/**
 * Predicate returning @c 1 (true) or @c 0 (false) depending on whether a
 * mathematical formula is defined for this Constraint_t.
 *
 * @param c the Constraint_t structure.
 * 
 * @return @return @c 1 (true) if the "math" subelement for this Constraint_t
 * is set, @c 0 (false) otherwise.
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
int
Constraint_isSetMath (const Constraint_t *c);


/**
 * Sets the message of this Constraint_t.
 *
 * @param c the Constraint_t structure.
 *
 * @param xhtml an XML tree containing XHTML content.
 *
 * @copydetails doc_returns_success_code
 * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
 * @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
int
Constraint_setMessage (Constraint_t *c, const XMLNode_t* xhtml);


/**
 * Sets the mathematical expression of this Constraint_t.
 *
 * @param c the Constraint_t structure.
 *
 * @param math an ASTNode_t expression to be assigned as the "math"
 * subelement of this Constraint_t.
 *
 * @copydetails doc_returns_success_code
 * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
 * @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
int
Constraint_setMath (Constraint_t *c, const ASTNode_t *math);


/**
 * Unsets the "message" subelement of this Constraint_t.
 *
 * @param c the Constraint_t structure.
 *
 * @copydetails doc_returns_success_code
 * @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
 * @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
 *
 * @memberof Constraint_t
 */
LIBSBML_EXTERN
int 
Constraint_unsetMessage (Constraint_t *c);


END_C_DECLS
LIBSBML_CPP_NAMESPACE_END


#endif  /* !SWIG */
#endif  /* Constraint_h */