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1422 1423 1424 1425 1426 1427 1428 1429 1430 1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444 1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458 1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472 1473 1474 1475 1476 | /**
* @file CompSBMLErrorTable.h
* @brief Represents SBML errors and other diagnostics
* @author Sarah Keating
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2017 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright 2011-2012 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ---------------------------------------------------------------------- -->*/
#ifndef CompSBMLErrorTable_h
#define CompSBMLErrorTable_h
#include <sbml/packages/comp/validator/CompSBMLError.h>
LIBSBML_CPP_NAMESPACE_BEGIN
/** @cond doxygenLibsbmlInternal */
static const packageErrorTableEntry compErrorTable[] =
{
// 1010100
{ CompUnknown,
"Unknown error from comp",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Unknown error from comp",
{ ""
}
},
// 1010101
{ CompNSUndeclared,
"The comp ns is not correctly declared",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"To conform to Version 1 of the Hierarchical Model "
"Composition package specification for SBML Level 3, an "
"SBML document must declare the use of the following XML Namespace: "
"'http://www.sbml.org/sbml/level3/version1/comp/version1'",
{ "L3V1 Comp V1 Section 3.1"
}
},
// 1010102
{ CompElementNotInNs,
"Element not in comp namespace",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Wherever they appear in an SBML document, "
"elements and attributes from the Hierarchical Model Composition "
"package must be declared either implicitly or explicitly to be in the "
"XML namespace 'http://www.sbml.org/sbml/level3/version1/comp/version1'",
{ "L3V1 Comp V1 Section 3.1"
}
},
// 1010301
{ CompDuplicateComponentId,
"Duplicate 'id' attribute value",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"(Extends validation rule #10301 in the SBML Level 3 Version 1 Core "
"specification.) Within a <model> or <modelDefinition> object, "
"the values of the attributes id and comp:id on every instance of the "
"following classes of objects must be unique across the set of all id "
"and comp:id attribute values of all such objects in a model: the "
"model itself, plus all contained <functionDefinition>, <compartment>, "
"<species>, <reaction>, <speciesReference>, <modifierSpeciesReference>, "
"<event>, and <parameter> objects, plus the <submodel> and <deletion> "
"objects defined by the Hierarchical Model Composition package, plus "
"any objects defined by any other package with 'package:id' "
"attributes defined as falling in the 'SId' namespace.",
{ "L3V1 Comp V1 Section 3.9"
}
},
// 1010302
{ CompUniqueModelIds,
"Model and ExternalModelDefinitions must have unique ids",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The values of the attributes 'id' and "
"'comp:id' on every instance of all <model>, <modelDefinition>, and "
"<externalModelDefinition> objects must be unique across the set of all "
"'id' and 'comp:id' attribute values of such objects "
"in the SBML document to which they belong.",
{ "L3V1 Comp V1 Section 3.9"
}
},
// 1010303
{ CompUniquePortIds,
"Ports must have unique ids",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Within <model> and <modelDefinition> objects inside an SBML document, "
"the value of the attribute 'comp:id' on every instance of a "
"<port> object must be unique across the set of all 'comp:id' "
"attribute values of all such objects in the model.",
{ "L3V1 Comp V1 Section 3.9"
}
},
// 1010304
{ CompInvalidSIdSyntax,
"Invalid SId syntax",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a comp:id attribute must always conform to the "
"syntax of the SBML data type SId.",
{ "L3V1 Core Section 3.1.7"
}
},
// 1010308
{ CompInvalidSubmodelRefSyntax,
"Invalid submodelRef syntax",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:submodelRef' attribute "
"on <replacedElement> and <replacedBy> objects must always conform to the "
"syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1010309
{ CompInvalidDeletionSyntax,
"Invalid deletion syntax",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:deletion' attribute "
"on <replacedElement> objects must always conform to the "
"syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1010310
{ CompInvalidConversionFactorSyntax,
"Invalid conversionFactor syntax",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:conversionFactor' attribute "
"on <replacedElement> objects must always conform to the "
"syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1010311
{ CompInvalidNameSyntax,
"Invalid name syntax",
LIBSBML_CAT_IDENTIFIER_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:name' attribute "
"must always conform to the "
"syntax of type string.",
{ "L3V1 Core Section 3.1.1"
}
},
// 1010501
{ CompReplacedUnitsShouldMatch,
"Units of replaced elements should match replacement units.",
LIBSBML_CAT_UNITS_CONSISTENCY,
LIBSBML_SEV_WARNING,
"If one element replaces another, whether it is the target of "
"a <replacedBy> element, or whether it has a child <replacedElement>, "
"the units of the replaced element, multiplied by the units of any "
"applicable conversion factor, should equal the units of the "
"replacement element.",
{ "L3V1 Comp V1 Section 3.6.5"
}
},
// 1020101
{ CompOneListOfReplacedElements,
"Only one <listOfReplacedElements> allowed.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Any object derived from the extended SBase class "
"(defined in the Hierarchical Model Composition package) may contain "
"at most one instance of a <listOfReplacedElements> subobject.",
{ "L3V1 Comp V1 Section 3.6"
}
},
// 1020102
{ CompLOReplaceElementsAllowedElements,
"Allowed children of <listOfReplacedElements>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects permitted on "
"all SBML objects, a <listOfReplacedElements> container object may "
"only contain <replacedElement> objects.",
{ "L3V1 Comp V1 Section 3.6"
}
},
// 1020103
{ CompLOReplacedElementsAllowedAttribs,
"Allowed <listOfReplacedElements> attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfReplacedElements> object may have the optional attributes "
"'metaid' and 'sboTerm' defined by SBML Level 3 Core. No other "
"attributes from the SBML Level 3 Core namespace or the "
"HierarchicalModel Composition namespace are permitted on a "
"<listOfReplacedElements> object.",
{ "L3V1 Comp V1 Section 3.6"
}
},
// 1020104
{ CompEmptyLOReplacedElements,
"<listOfReplacedElements> must not be empty",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The <listOfReplacedElements> in an SBase object is optional, but "
"if present, must not be empty.",
{ "L3V1 Comp V1 Section 3.6"
}
},
// 1020105
{ CompOneReplacedByElement,
"Only one <replacedBy> object allowed.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Any object derived from the extended SBase class "
"(defined in the Hierarchical Model Composition package) may contain "
"at most one instance of a <replacedBy> subobject.",
{ "L3V1 Comp V1 Section 3.6"
}
},
// 1020201
{ CompAttributeRequiredMissing,
"Required comp:required attribute on <sbml>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"In all SBML documents using the HierarchicalModel Composition "
"package, the SBML object must include a value for the attribute "
"'comp:required' attribute.",
{ "L3V1 Core Section 4.1.2"
}
},
// 1020202
{ CompAttributeRequiredMustBeBoolean,
"The comp:required attribute must be Boolean",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of attribute 'comp:required' on the SBML object must "
"be of the data type Boolean.",
{ "L3V1 Core Section 4.1.2"
}
},
// 1020203
{ CompRequiredTrueIfElementsRemain,
"The comp:required attribute must be 'true' if math changes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_NOT_APPLICABLE,
"The value of attribute 'comp:required' on the SBML object must "
"be set to 'true' if the Model object within the SBML object "
"contains any Submodel with Species, Parameter, Compartment, "
"Reaction, or Event objects that have not been either directly or "
"indirectly replaced.",
{ "L3V1 Comp V1 Section 3.1"
}
},
// 1020204
{ CompRequiredFalseIfAllElementsReplaced,
"The comp:required attribute must be 'false' if math does not change",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_NOT_APPLICABLE,
"The value of attribute 'comp:required' on the SBML object must be "
"set to 'false' if the Model object within the SBML object contains "
"no Submodel objects, or if all Submodel objects that are present "
"contain no Species, Parameter, Compartment, Reaction, or Event "
"objects that have not been either directly or indirectly replaced.",
{ "L3V1 Comp V1 Section 3.1"
}
},
// 1020205
{ CompOneListOfModelDefinitions,
"Only one <listOfModelDefinitions> allowed.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"There may be at most one instance of the <listOfModelDefinitions> "
"within an SBML object that uses the SBML Level 3 Hierarchical "
"Model Composition package.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020206
{ CompEmptyLOModelDefs,
"<listOfModelDefinitions> and <listOfExternalModelDefinitions> must not be empty",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The various 'ListOf' subobjects within an SBML object are optional, "
"but if present, these container objects must not be empty. "
"Specifically, if any of the following classes of objects is present "
"within the SBML object, it must not be empty: "
"<listOfModelDefinitions> and <listOfExternalModelDefinitions>.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020207
{ CompLOModelDefsAllowedElements,
"Only <modelDefinitions> in <listOfModelDefinitions>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects permitted on "
"all SBML objects, a <listOfModelDefinitions> container may only "
"contain <modelDefinition> objects.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020208
{ CompLOExtModelDefsAllowedElements,
"Only <externalModelDefinitions> in <listOfExternalModelDefinitions>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects permitted on "
"all SBML objects, a <listOfExternalModelDefinitions> container may "
"only contain <externalModelDefinition> objects.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020209
{ CompLOModelDefsAllowedAttributes,
"Allowed <listOfModelDefinitions> attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfModelDefinitions> object may have the optional attributes "
"'metaid' and 'sboTerm'. No other attributes from the SBML Level 3 "
"Core namespace or the HierarchicalModel Composition namespace are "
"permitted on a <listOfModelDefinitions> object.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020210
{ CompLOExtModDefsAllowedAttributes,
"Allowed <listOfExternalModelDefinitions> attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfExternalModelDefinitions> object may have the optional "
"attributes 'metaid' and 'sboTerm'. No other attributes from the "
"SBML Level 3 Core namespace or the HierarchicalModel Composition "
"namespace are permitted on a <listOfExternalModelDefinitions> object.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020211
{ CompOneListOfExtModelDefinitions,
"Only one <listOfExternalModelDefinitions> allowed.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"There may be at most one instance of the "
"<listOfExternalModelDefinitions> within an SBML object that uses the "
"SBML Level 3 Hierarchical Model Composition package.",
{ "L3V1 Comp V1 Section 3.3"
}
},
// 1020212
{ CompAttributeRequiredMustBeTrue,
"The comp:required attribute must be 'true'",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of attribute 'comp:required' on the SBML object must "
"be set to 'true'.",
{ "L3V1 Comp V1 Section 3.1"
}
},
// 1020301
{ CompExtModDefAllowedCoreAttributes,
"Allowed <externalModelDefinitions> core attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An <externalModelDefinition> object may have the optional "
"SBML Level 3 Core attributes 'metaid' and 'sboTerm'. No "
"other attributes from the SBML Level 3 Core namespace are permitted on "
"an <externalModelDefinition> object.",
{ "L3V1 Comp V1 Section 3.2"
}
},
// 1020302
{ CompExtModDefAllowedElements,
"Allowed <externalModelDefinitions> elements",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An <externalModelDefinition> object may have the optional "
"SBML Level 3 Core subobjects for notes and annotation. No "
"other subobjects from the SBML Level 3 Core namespace or the "
"Hierarchical Model Composition namespace are permitted on "
"an <externalModelDefinition> object.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020303
{ CompExtModDefAllowedAttributes,
"Allowed <externalModelDefinitions> attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An <externalModelDefinition> object must have the attributes "
"'comp:id' and 'comp:source', and may have the optional attributes "
"'comp:name', 'comp:modelRef', and 'comp:md5'. No other attributes "
"from the Hierarchical Model Composition namespace are permitted on "
"an <externalModelDefinition> object.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020304
{ CompReferenceMustBeL3,
"External models must be L3",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of the 'comp:source' attribute on an <externalModelDefinition> "
"object must reference an SBML Level 3 Version 1 document.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020305
{ CompModReferenceMustIdOfModel,
"'modelRef' must be the 'id' of a model in the 'source' document",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of the 'comp:modelRef' attribute on an <externalModelDefinit"
"ion> object must be the value of an id attribute on a <model>, "
"<modelDefinition>, or <externalModelDefinition> object in the SBML "
"document referenced by the 'comp:source' attribute.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020306
{ CompExtModMd5DoesNotMatch,
"MD5 checksum does not match the 'source' document",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The value of the 'comp:md5' attribute, if present on an "
"<externalModelDefinition> object, should match the calculated MD5 "
"checksum of the SBML document referenced by the 'comp:source' "
"attribute. ",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020307
{ CompInvalidSourceSyntax,
"The 'comp:source' attribute must be of type 'anyURI'",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:source' attribute on an <externalModelDefinition> "
"object must always conform to the syntax of the XML Schema 1.0 data "
"type 'anyURI'.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020308
{ CompInvalidModelRefSyntax,
"The 'comp:modelRef' attribute must have the syntax of 'SId'",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a comp:modelRef attribute on an <externalModelDefinition> "
"object must always conform to the syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020308
{ CompInvalidMD5Syntax,
"The 'comp:md5' attribute must have the syntax of 'string'",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a comp:md5 attribute on an <externalModelDefinition> "
"object must always conform to the syntax of type string.",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020310
{ CompCircularExternalModelReference,
"Circular reference in <externalModelDefinition>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An <externalModelDefinition> object must not reference an "
"<externalModelDefinition> in a different SBML document that, in turn, "
"refers back to the original <externalModelDefinition object, "
"whether directly or indirectly through a chain of "
"<externalModelDefinition> objects. ",
{ "L3V1 Comp V1 Section 3.3.2"
}
},
// 1020501
{ CompOneListOfOnModel,
"Only one <listOfSubmodels> and one <listOfPorts> allowed",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"There may be at most one instance of each of the following kinds of "
"objects within a <model> or <modelDefinition> object using "
"Hierarchical Model Composition: <listOfSubmodels> and <listOfPorts>.",
{ "L3V1 Comp V1 Section 3.4"
}
},
// 1020502
{ CompNoEmptyListOfOnModel,
"No empty listOf elements allowed",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The various ListOf subobjects with a <model> object are optional, "
"but if present, these container object must not be empty. "
"Specifically, if any of the following classes of objects "
"are present on the <model>, it must not be empty: <listOfSubmodels> "
"and <listOfPorts>.",
{ "L3V1 Comp V1 Section 3.4"
}
},
// 1020503
{ CompLOSubmodelsAllowedElements,
"Allowed elements on <listOfSubmodels>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects "
"permitted on all SBML objects, a <listOfSubmodels> container "
"object may only contain <submodel> objects.",
{ "L3V1 Comp V1 Section 3.4"
}
},
// 1020504
{ CompLOPortsAllowedElements,
"Allowed elements on <listOfPorts>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects "
"permitted on all SBML objects, a <listOfPorts> container "
"object may only contain <port> objects.",
{ "L3V1 Comp V1 Section 3.4"
}
},
// 1020505
{ CompLOSubmodelsAllowedAttributes,
"Allowed attributes on <listOfSubmodels>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfSubmodels> object may have the optional "
"attributes 'metaid' and 'sboTerm'. No other attributes from the "
"SBML Level 3 Core namespace or the HierarchicalModel Composition "
"namespace are permitted on a <listOfSubmodels> object.",
{ "L3V1 Comp V1 Section 3.4"
}
},
// 1020506
{ CompLOPortsAllowedAttributes,
"Allowed attributes on <listOfPorts>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfPorts> object may have the optional "
"attributes 'metaid' and 'sboTerm'. No other attributes from the "
"SBML Level 3 Core namespace or the HierarchicalModel Composition "
"namespace are permitted on a <listOfPorts> object.",
{ "L3V1 Comp V1 Section 3.4"
}
},
// 1010601
{ CompSubmodelAllowedCoreAttributes,
"Allowed core attributes on <submodel>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <submodel> object may have the optional SBML Level 3 Core "
"attributes 'metaid' and 'sboTerm'. No other attributes from "
"the SBML Level 3 Core namespace are permitted on a <submodel> object.",
{ "L3V1 Core Section 3.2"
}
},
// 1010602
{ CompSubmodelAllowedElements,
"Allowed elements on <submodel>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <submodel> object may have the optional SBML Level 3 Core "
"subobjects for notes and annotations. No other elements from "
"the SBML Level 3 Core namespace are permitted on a <submodel> object.",
{ "L3V1 Core Section 3.2"
}
},
// 1020603
{ CompOneListOfDeletionOnSubmodel,
"Only one <listOfDeletions> on a <submodel> allowed",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"There may be at most one <listOfDeletions> container object within a "
"<submodel> object.",
{ "L3V1 Comp V1 Section 3.5"
}
},
// 1020604
{ CompSubmodelNoEmptyLODeletions,
"No empty listOfDeletions elements allowed",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfDeletions> container object within a <submodel> object "
"is optional, but if present, must not be empty.",
{ "L3V1 Comp V1 Section 3.5"
}
},
// 1020605
{ CompLODeletionsAllowedElements,
"Allowed elements on <listOfDeletions>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects permitted on "
"all SBML objects, a <listOfDeletions> container object may only contain "
"<deletion> objects.",
{ "L3V1 Comp V1 Section 3.5"
}
},
// 1020606
{ CompLODeletionAllowedAttributes,
"Allowed <listOfDeletions> attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <listOfDeletions> object may have the optional attributes "
"'metaid' and 'sboTerm' defined by SBML Level 3 Core. No other "
"attributes from the SBML Level 3 Core namespace or the "
"HierarchicalModel Composition namespace are permitted on a "
"<listOfReplacedElements> object.",
{ "L3V1 Comp V1 Section 3.5"
}
},
// 1020607
{ CompSubmodelAllowedAttributes,
"Allowed <submodel> attributes",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <submodel> object must have the attributes 'comp:id' and "
"'comp:modelRef' because they are required, and may also have the "
"optional attributes 'comp:name', 'comp:timeConversionFactor, and/or "
"'comp:extentConversionFactor'. No other attributes from the "
"Hierarchical Model Composition namespace are permitted on a "
"<submodel> object.",
{ "L3V1 Comp V1 Section 3.5"
}
},
// 1020608
{ CompModReferenceSyntax,
"'comp:modelRef' must conform to SId syntax",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:modelRef' attribute on a <submodel> object must "
"always conform to the syntax of the SBML data type SId. ",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020613
{ CompInvalidTimeConvFactorSyntax,
"'comp:timeConversionFactor' must conform to SId syntax",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:timeConversionFactor' attribute on a <submodel> object must "
"always conform to the syntax of the SBML data type SId. ",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020614
{ CompInvalidExtentConvFactorSyntax,
"'comp:extentConversionFactor' must conform to SId syntax",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:extentConversionFactor' attribute on a <submodel> object must "
"always conform to the syntax of the SBML data type SId. ",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020615
{ CompSubmodelMustReferenceModel,
"The 'comp:modelRef' attribute must reference a model",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:modelRef' attribute on a <submodel> must be the "
"identifier of a <model>, <modelDefinition>, or "
"<externalModelDefinition> object in the same SBML object as the "
"<submodel>.",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020616
{ CompSubmodelCannotReferenceSelf,
"The 'comp:modelRef' attribute cannot reference own model",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <model> or <modelDefinition> object must not contain a <submodel> "
"which references that model object itself. That is, the value of a "
"'comp:modelRef' attribute on a <submodel> must not be the value of "
"the parent <model> or <modelDefinition>'s 'id' attribute.",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020617
{ CompModCannotCircularlyReferenceSelf,
"<model> may not reference <submodel> that references itself.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <model> object must not contain a <submodel> which references that "
"<model> indirectly. That is, the 'comp:modelRef' attribute of a "
"<submodel> may not point to the 'id' of a <model> containing a "
"<submodel> object that references the original <model> directly or "
"indirectly through a chain of <model>/<submodel> pairs.",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020622
{ CompTimeConversionMustBeParameter,
"The 'comp:timeConversionFactor' must reference a parameter",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:timeConversionFactor' attribute on a given "
"<submodel> object must be the identifier of a <parameter> object "
"defined in the same Model containing the <submodel>.",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020623
{ CompExtentConversionMustBeParameter,
"The 'comp:extentConversionFactor' must reference a parameter",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:extentConversionFactor' attribute on a given "
"<submodel> object must be the identifier of a <parameter> object "
"defined in the same Model containing the <submodel>.",
{ "L3V1 Comp V1 Section 3.5.1"
}
},
// 1020701
{ CompPortRefMustReferencePort,
"The 'comp:portRef' attribute must be the 'id' of a <port>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:portRef' attribute on an <sBaseRef> object "
"must be the identifier of a <port> object in the <model> referenced "
"by that <sBaseRef>.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020702
{ CompIdRefMustReferenceObject,
"The 'comp:idRef' attribute must be the 'id' of a model element",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:idRef' attribute on an <sBaseRef> object must "
"be the identifier of an object contained in (that is, within the "
"SId namespace of) the <model> referenced by that <sBaseRef>. This "
"includes objects with 'id' attributes defined in packages other "
"than SBML Level 3 Core or the Hierarchical Model Composition "
"package.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020703
{ CompUnitRefMustReferenceUnitDef,
"The 'comp:unitRef' attribute must be the 'id' of a UnitDefinition",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:unitRef' attribute on an <sBaseRef> object must "
"be the identifier of a <unitDefinition< object contained in the "
"<model> referenced by that <sBaseRef>.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020704
{ CompMetaIdRefMustReferenceObject,
"The 'comp:metaIdRef' attribute must be the 'metaid' of an object",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:metaIdRef' attribute on an <sBaseRef> object "
"must be the value of a 'comp:metaid' attribute on an element contained "
"in the <model> referenced by that <sBaseRef>.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020705
{ CompParentOfSBRefChildMustBeSubmodel,
"If <sBaseRef> has a child <sBaseRef> its parent must be a <submodel>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"If an <sBaseRef> object contains an <sBaseRef> child, the parent "
"<sBaseRef> must point to a <submodel> object, or a "
"<port> that itself points to a <submodel> object. ",
{ "L3V1 Comp V1 Section 3.7.2"
}
},
// 1020706
{ CompInvalidPortRefSyntax,
"The 'comp:portRef' attribute must have the syntax of an SBML SId",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:portRef' attribute on an SBaseRef object must "
"always conform to the syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020707
{ CompInvalidIdRefSyntax,
"The 'comp:idRef' attribute must have the syntax of an SBML SId",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:idRef' attribute on an SBaseRef object must "
"always conform to the syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020708
{ CompInvalidUnitRefSyntax,
"The 'comp:unitRef' attribute must have the syntax of an SBML SId",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:unitRef' attribute on an SBaseRef object must "
"always conform to the syntax of the SBML data type SId.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020709
{ CompInvalidMetaIdRefSyntax,
"The 'comp:metaIdRef' attribute must have the syntax of an XML ID",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:metaIdRef' attribute on an SBaseRef object must "
"always conform to the syntax of the XML data type ID.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020710
{ CompOneSBaseRefOnly,
"Only one <sbaseRef>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Apart from the general notes and annotation subobjects permitted on "
"all SBML objects, an SBaseRef object may only contain a single "
"<sBaseRef> child.",
{ "L3V1 Comp V1 Section 3.7.2"
}
},
// 1020711
{ CompDeprecatedSBaseRefSpelling,
"The spelling 'sbaseRef' is deprecated",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The 'sbaseRef' spelling of an SBaseRef child of an SBaseRef object "
"is considered deprecated, and 'sBaseRef' should be used instead.",
{ "L3V1 Comp V1 Section 3.7.2"
}
},
// 1020712
{ CompSBaseRefMustReferenceObject,
"An SBaseRef must reference an object.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An <sBaseRef> object must point to another object; that is, a "
"<sBaseRef> object must always have a value for one of the attributes "
"'comp:portRef', 'comp:idRef', 'comp:unitRef', or 'comp:metaIdRef'.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020713
{ CompSBaseRefMustReferenceOnlyOneObject,
"An SBaseRef must reference only one other object.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An <sBaseRef> object can only point to one other object; that is, "
"a given <sBaseRef> object can only have a value for one of the "
"attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef', or "
"'comp:metaIdRef'.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020714
{ CompNoMultipleReferences,
"Objects may not be referenced by multiple SBaseRef constructs.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Any one SBML object may only be referenced in one of the following ways: "
"referenced by a single <port> object; referenced by a single <deletion> "
"object; referenced by a single <replacedElement>; be the parent of a "
"single <replacedBy> child; be referenced by one or more <replacedBy> "
"objects; or be referenced by one or more <replacedElement> objects all "
"using the 'deletion' attribute. Essentially, once an object has been "
"referenced in one of these ways it cannot be referenced again.",
{ "L3V1 Comp V1 Section 3.7.1"
}
},
// 1020801
{ CompPortMustReferenceObject,
"Port must reference an object",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <port> object must point to another object; that "
"is, a <port> object must always have a value for one of the attributes "
"'comp:idRef', 'comp:unitRef', or 'comp:metaIdRef'.",
{ "L3V1 Comp V1 Section 3.4.3"
}
},
// 1020802
{ CompPortMustReferenceOnlyOneObject,
"Port must reference only one other object.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <port> object can only point to one other "
"object; that is, a given <port> object can only have a value for one of "
"the attributes 'comp:idRef', 'comp:unitRef', or 'comp:metaIdRef'.",
{ "L3V1 Comp V1 Section 3.4.3"
}
},
// 1020803
{ CompPortAllowedAttributes,
"Allowed attributes on a Port",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <port> object must have a value for the required "
"attribute 'comp:id', and one, and only one, of the "
"attributes 'comp:idRef', 'comp:unitRef', or "
"'comp:metaIdRef'. No other attributes from the Hierarchical "
"Model Composition namespace are permitted on a <port> object.",
{ "L3V1 Comp V1 Section 3.4.3"
}
},
// 1020804
{ CompPortReferencesUnique,
"Port definitions must be unique.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Port definitions must be unique; that is, no two "
"<port> objects in a given Model may reference the same object in that "
"Model.",
{ "L3V1 Comp V1 Section 3.4.3"
}
},
// 1020901
{ CompDeletionMustReferenceObject,
"Deletion must reference an object",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <deletion> object must point to another object; that "
"is, a <deletion> object must always have a value for one of the attributes "
"'comp:portRef', 'comp:idRef', 'comp:unitRef', or 'comp:metaIdRef'",
{ "L3V1 Comp V1 Section 3.5.3"
}
},
// 1020902
{ CompDeletionMustReferOnlyOneObject,
"Deletion must reference only one other object.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <deletion> object can only point to one other "
"object; that is, a given <deletion> object can only have a value for one of "
"the attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef', or "
"'comp:metaIdRef'",
{ "L3V1 Comp V1 Section 3.5.3"
}
},
// 1020903
{ CompDeletionAllowedAttributes,
"Allowed attributes on a Deletion",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <deletion> object must have a value for one, and only one, of the "
"attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef', and "
"'comp:metaIdRef'. It may also have the optional attributes 'comp:id' "
"and 'comp:name'. No other attributes from the Hierarchical "
"Model Composition namespace are permitted on a <deletion> object.",
{ "L3V1 Comp V1 Section 3.5.3"
}
},
// 1021001
{ CompReplacedElementMustRefObject,
"ReplacedElement must reference an object",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <replacedElement> object must point to another object; that "
"is, a <replacedElement> object must always have a value for one of the "
"attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef', "
"'comp:metaIdRef' or 'comp:deletion'.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021002
{ CompReplacedElementMustRefOnlyOne,
"ReplacedElement must reference only one other object.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <replacedElement> object can only point to one other "
"object; that is, a given <replacedElement> object can only have a value "
"for one of the attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef', "
"'comp:metaIdRef' or 'comp:deletion'.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021003
{ CompReplacedElementAllowedAttributes,
"Allowed attributes on <replacedElement>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <replacedElement> object must have a value for the required attribute "
"'comp:submodelRef', and a value for one, and only one, of the following "
"attributes: 'comp:portRef', 'comp:idRef', 'comp:unitRef', "
"'comp:metaIdRef', or 'comp:deletion'. It may also have a value for the "
"optional attribute 'comp:conversionFactor'. No other attributes from "
"the HierarchicalModel Composition namespace are permitted on a "
"<replacedElement> object.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021004
{ CompReplacedElementSubModelRef,
"The 'comp:submodelRef' attribute must point to a <submodel>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:submodelRef' attribute on a <replacedElement> "
"object must be the identifier of a <submodel> present in the "
"<replacedElement> object's parent Model.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021005
{ CompReplacedElementDeletionRef,
"The 'comp:deletion' attribute must point to a <deletion>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:deletion' attribute on a <replacedElement> "
"object must be the identifier of a <deletion> present in the "
"<replacedElement> object's parent Model.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021006
{ CompReplacedElementConvFactorRef,
"The 'comp:conversionFactor attribute must point to a <parameter>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:conversionFactor' attribute on a "
"<replacedElement> object must be the identifier of a <parameter> "
"present in the <replacedElement> object's parent Model",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021010
{ CompReplacedElementSameReference,
"No <replacedElement> refer to same object",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"No two <replacedElement> objects in the same Model may reference the same "
"object unless that object is a <deletion>",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021011
{ CompReplacedElementNoDelAndConvFact,
"No <replacedElement> with deletion and conversionfactor",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"If a <replacedElement> uses the 'comp:deletion' attribute, then it "
"should not also use the 'comp:conversionFactor' attribute.",
{ "L3V1 Comp V1 Section 3.6.2"
}
},
// 1021101
{ CompReplacedByMustRefObject,
"ReplacedBy must reference an object",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <replacedBy> object must point to another object; that "
"is, a <replacedBy> object must always have a value for one of the "
"attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef' or "
"'comp:metaIdRef'.",
{ "L3V1 Comp V1 Section 3.6.4"
}
},
// 1021102
{ CompReplacedByMustRefOnlyOne,
"ReplacedBy must reference only one other object.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <replacedBy> object can only point to one other "
"object; that is, a given <replacedBy> object can only have a value "
"for one of the attributes 'comp:portRef', 'comp:idRef', 'comp:unitRef', "
"or 'comp:metaIdRef'.",
{ "L3V1 Comp V1 Section 3.6.4"
}
},
// 1021103
{ CompReplacedByAllowedAttributes,
"Allowed attributes on <replacedBy>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"A <replacedBy> object must have a value for the required attribute "
"'comp:submodelRef', and a value for one, and only one, of the following "
"attributes: 'comp:portRef', 'comp:idRef', 'comp:unitRef' "
"or 'comp:metaIdRef'. No other attributes from "
"the HierarchicalModel Composition namespace are permitted on a "
"<replacedElement> object.",
{ "L3V1 Comp V1 Section 3.6.4"
}
},
// 1021104
{ CompReplacedBySubModelRef,
"The 'comp:submodelRef' attribute must point to a <submodel>",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The value of a 'comp:submodelRef' attribute on a <replacedBy> "
"object must be the identifier of a <submodel> present in the "
"<replacedBy> object's parent Model.",
{ "L3V1 Comp V1 Section 3.6.4"
}
},
// 1021201
{ CompMustReplaceSameClass,
"Replaced classes must match.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"If one element replaces another, whether it is the target of a "
"<replacedBy> element, or whether it has a child <replacedElement>, "
"the SBML class of the replacement element must match the SBML class "
"of the replaced element, with two exceptions: an element of a derived "
"class may replace an object of its base class (for base classes other "
"than SBase), and any SBML class with mathematical meaning may "
"replace a <parameter>. A base class may not replace a derived class, "
"however, nor may a <parameter> replace some other SBML element with "
"mathematical meaning.",
{ "L3V1 Comp V1 Section 3.6.5"
}
},
// 1021202
{ CompMustReplaceIDs,
"Replaced IDs must be replaced with IDs.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"If one element replaces another, whether it is the target of a "
"<replacedBy> element, or whether it has a child <replacedElement>, "
"if the replaced element has the 'id' attribute set, the replacement !"
"element must also have the 'id' attribute set.",
{ "L3V1 Comp V1 Section 3.6.5"
}
},
// 1021203
{ CompMustReplaceMetaIDs,
"Replaced metaids must be replaced with metaids.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"If one element replaces another, whether it is the target of a "
"<replacedBy> element, or whether it has a child <replacedElement>, "
"if the replaced element has the 'metaid' attribute set, the replacement "
"element must also have the 'metaid' attribute set.",
{ "L3V1 Comp V1 Section 3.6.5"
}
},
// 1021204
{ CompMustReplacePackageIDs,
"Replaced package IDs must be replaced with package IDs.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"If one element replaces another, whether it is the target of a "
"<replacedBy> element, or whether it has a child <replacedElement>, "
"if the replaced element has an identifier attribute from some other "
"SBML package set, the replacement element must also have that same "
"identifier attribute set.",
{ "L3V1 Comp V1 Section 3.6.5"
}
},
// 1090101
{ CompUnresolvedReference,
"Unresolved reference.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The external model referenced in this model could not be "
"resolved. ",
{ ""
}
},
// 1090102
{ CompNoModelInReference,
"No model in referenced document.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The external document referenced in this model did not contain any models.",
{ ""
}
},
// 1090103
{ CompExtModDefBad,
"Referenced <externalModelDefinition> unresolvable.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"An external model definition referenced by an external model "
"definition in this model was itself unresolvable.",
{ ""
}
},
// 1090104
{ CompModelFlatteningFailed,
"Model failed to flatten.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"Errors arose during the attempt to flatten the model.",
{ ""
}
},
// 1090105
{ CompFlatModelNotValid,
"Flat model not valid.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The interpretation the Hierarchical Model Composition constructs to "
"produce a kind of 'flattened' version of the model devoid of the comp "
"package constructs must produce a valid SBML Level 3 model.",
{ "L3V1 Comp V1 Appendix A1"
}
},
// 1090106
{ CompLineNumbersUnreliable,
"Line numbers unreliable.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"Due to the need to instantiate models, modelDefinitions, submodels etc. "
"for the purposes of validation it is problematic to reliably report "
"line numbers when performing validation on models using the "
"Hierarchical Model Composition package." ,
{ ""
}
},
// 1090107
{ CompFlatteningNotRecognisedReqd,
"Flattening not implemented for required package.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The CompFlatteningConverter has encountered a required package for "
"which libSBML does not recognize the information.",
{ ""
}
},
// 1090108
{ CompFlatteningNotRecognisedNotReqd,
"Flattening not implemented for unrequired package.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The CompFlatteningConverter has encountered an unrequired package for "
"which libSBML does not recognize the information.",
{ ""
}
},
// 1090109
{ CompFlatteningNotImplementedNotReqd,
"Flattening not implemented for unrequired package.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The CompFlatteningConverter has encountered an unrequired package for "
"which "
"the necessary routines to allow flattening have not yet been implemented. "
"" ,
{ ""
}
},
// 1090110
{ CompFlatteningNotImplementedReqd,
"Flattening not implemented for required package.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The CompFlatteningConverter has encountered a required package for which "
"the necessary routines to allow flattening have not yet been implemented. "
"" ,
{ ""
}
},
// 1090111
{ CompFlatteningWarning,
"Flattening reference may come from package.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The CompFlatteningConverter has encountered an unknown reference which may "
"be due to the presence of an unknown package."
"" ,
{ ""
}
},
// 1090112
{ CompDeprecatedDeleteFunction,
"The performDeletions functions is deprecated.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The software used to process this hierarchical model used the deprecated "
"function performDeletions to do so. Unfortunately, it is "
"impossible to properly use this function "
"as it was originally designed, "
"without some models either causing the program to crash, or causing them "
"to be interpreted incorrectly. Instead, the software should use "
"collectDeletionsAndDeleteCompConstructs, in conjunction with "
"collectRenameAndConvertReplacements and removeCollectedElements "
"to properly process hierarchical models."
"" ,
{ ""
}
},
// 1090113
{ CompDeprecatedReplaceFunction,
"The performReplacementsAndConversions functions is deprecated.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The software used to process this hierarchical model used the deprecated "
"function performReplacementsAndConversions to do so. Unfortunately, it is "
"impossible to properly use this function "
"as it was originally designed, "
"without some models either causing the program to crash, or causing them "
"to be interpreted incorrectly. Instead, the software should use "
"collectDeletionsAndDeleteCompConstructs, in conjunction with "
"collectRenameAndConvertReplacements and removeCollectedElements "
"to properly process hierarchical models."
"" ,
{ ""
}
},
// 1090114
{ CompDeletedReplacement,
"Element deleted before a subelement could be replaced.",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_ERROR,
"The model contained a deletion whose subelement was replaced. This "
"is perfectly legal, but unfortunately, the subroutine used to implement "
"this actually removed the deleted element and all of its children before "
"replacing the child, making it impossible to discover any IDs that need to "
"be replaced."
"" ,
{ ""
}
},
// 1090115
{ CompIdRefMayReferenceUnknownPackage,
"The 'comp:idRef' attribute must be the 'id' of a model element",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The value of a 'comp:idRef' attribute on an <sBaseRef> object must "
"be the identifier of an object contained in (that is, within the "
"SId namespace of) the <model> referenced by that <sBaseRef>. This "
"includes objects with 'id' attributes defined in packages other "
"than SBML Level 3 Core or the Hierarchical Model Composition "
"package.",
{ ""
}
},
// 1090116
{ CompMetaIdRefMayReferenceUnknownPkg,
"The 'comp:metaIdRef' attribute must be the 'metaid' of a model element",
LIBSBML_CAT_GENERAL_CONSISTENCY,
LIBSBML_SEV_WARNING,
"The value of a 'comp:metaIdRef' attribute on an <sBaseRef> object "
"must be the value of a 'comp:metaid' attribute on an element contained "
"in the <model> referenced by that <sBaseRef>.",
{ ""
}
}
};
LIBSBML_CPP_NAMESPACE_END
#endif
/** @endcond */
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