/usr/include/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h is in libsbml5-dev 5.16.0+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 | /**
* @file LayoutSpeciesReferencePlugin.h
* @brief Definition of LayoutSpeciesReferencePlugin, the plugin
* class of layout package (Level2) for the SpeciesReference and
* ModifierSpeciesReference elements.
* @author Akiya Jouraku
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2017 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2006-2008 by the California Institute of Technology,
* Pasadena, CA, USA
*
* Copyright (C) 2002-2005 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. Japan Science and Technology Agency, Japan
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ------------------------------------------------------------------------ -->
*
* @class LayoutSpeciesReferencePlugin
* @sbmlbrief{layout} Extension of SpeciesReference.
*/
#ifndef LayoutSpeciesReferencePlugin_h
#define LayoutSpeciesReferencePlugin_h
#include <sbml/common/sbmlfwd.h>
#include <sbml/SBMLErrorLog.h>
#include <sbml/SpeciesReference.h>
#include <sbml/xml/XMLInputStream.h>
#include <sbml/xml/XMLOutputStream.h>
#include <sbml/extension/SBasePlugin.h>
#include <sbml/packages/layout/sbml/Layout.h>
#include <sbml/packages/layout/extension/LayoutExtension.h>
#ifdef __cplusplus
LIBSBML_CPP_NAMESPACE_BEGIN
class LIBSBML_EXTERN LayoutSpeciesReferencePlugin : public SBasePlugin
{
public:
/**
* Creates a new LayoutSpeciesReferencePlugin object using the given parameters.
*
* @copydetails doc_what_are_xmlnamespaces
*
* @copydetails doc_what_are_sbmlnamespaces
*
* @param uri the URI of the SBML Level 3 package implemented by
* this libSBML package extension.
*
* @param prefix the XML namespace prefix being used for the package.
*
* @param layoutns the namespaces object for the package.
*/
LayoutSpeciesReferencePlugin (const std::string &uri, const std::string &prefix,
LayoutPkgNamespaces* layoutns);
/**
* Copy constructor. Creates a copy of this SBase object.
*
* @param orig the instance to copy.
*/
LayoutSpeciesReferencePlugin(const LayoutSpeciesReferencePlugin& orig);
/**
* Destroy this object.
*/
virtual ~LayoutSpeciesReferencePlugin ();
/**
* Assignment operator for LayoutSpeciesReferencePlugin.
*
* @param orig the object whose values are used as the basis of the
* assignment.
*/
LayoutSpeciesReferencePlugin& operator=(const LayoutSpeciesReferencePlugin& orig);
/**
* Creates and returns a deep copy of this LayoutSpeciesReferencePlugin object.
*
* @return a (deep) copy of this LayoutSpeciesReferencePlugin object.
*/
virtual LayoutSpeciesReferencePlugin* clone () const;
/** @cond doxygenLibsbmlInternal */
/**
* Accepts the given SBMLVisitor.
*
* @return the result of calling <code>v.visit()</code>, which indicates
* whether or not the Visitor would like to visit the SBML object's next
* sibling object (if available).
*/
virtual bool accept (SBMLVisitor& v) const;
/** @endcond */
#ifndef SWIG
// ---------------------------------------------------------
//
// overridden virtual functions for reading/writing/checking
// attributes
//
// ---------------------------------------------------------
/** @cond doxygenLibsbmlInternal */
/**
* Parses Layout Extension of SBML Level 2
*/
virtual bool readOtherXML (SBase* parentObject, XMLInputStream& stream);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* This function is a bit tricky.
* This function is used only for setting annotation element of layout
* extension for SBML Level2 because annotation element needs to be
* set before invoking the above writeElements function.
* Thus, no attribute is written by this function.
*/
virtual void writeAttributes (XMLOutputStream& stream) const;
/** @endcond */
#endif //SWIG
};
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#endif /* LayoutSpeciesReferencePlugin_h */
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