This file is indexed.

/usr/include/shogun/metric/LMNN.h is in libshogun-dev 3.2.0-7.5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
/*
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * Written (W) 2013 Fernando J. Iglesias Garcia
 * Copyright (C) 2013 Fernando J. Iglesias Garcia
 */

#ifndef LMNN_H_
#define LMNN_H_

#include <shogun/lib/config.h>

#ifdef HAVE_EIGEN3
#ifdef HAVE_LAPACK

#include <shogun/base/SGObject.h>
#include <shogun/distance/CustomMahalanobisDistance.h>
#include <shogun/features/DenseFeatures.h>
#include <shogun/labels/MulticlassLabels.h>
#include <shogun/lib/SGMatrix.h>

namespace shogun
{

// Forward declaration
class CLMNNStatistics;

/**
 * @brief Class LMNN that implements the distance metric learning technique
 * Large Margin Nearest Neighbour (LMNN) described in
 *
 * Weinberger, K. Q., Saul, L. K.
 * Distance Metric Learning for Large Margin Nearest Neighbor Classification.
 */
class CLMNN : public CSGObject
{
	public:
		/** default constructor */
		CLMNN();

		/** standard constructor
		 *
		 * @param features feature vectors
		 * @param labels labels of the features
		 * @param k number of target neighbours per example
		 */
		CLMNN(CDenseFeatures<float64_t>* features, CMulticlassLabels* labels, int32_t k);

		/** destructor */
		virtual ~CLMNN();

		/** @return name of SGSerializable */
		virtual const char* get_name() const;

		/**
		 * LMNN algorithm to learn a linear transformation of the original feature
		 * space (or, equivalently, a Mahalanobis distance) such that kNN
		 * classification performance is maximized
		 *
		 * @param init_transform initial linear transform
		 */
		void train(SGMatrix<float64_t> init_transform=SGMatrix<float64_t>());

		/** get the learnt linear transform (denoted L in LMNN literature typically)
		 *
		 * @return the linear transform L
		 */
		SGMatrix<float64_t> get_linear_transform() const;

		/**
		 * get the learnt Mahalanobis distance (typically denoted M in LMNN literature)
		 * encapsulated in a CCustomMahalanobisDistance object, suitable to be used in kNN
		 *
		 * @return the distance M
		 */
		CCustomMahalanobisDistance* get_distance() const;

		/** get the number of target neighbours per example
		 *
		 * @return number of neighbours per example
		 */
		int32_t get_k() const;

		/** set the number of target neighbours per example
		 *
		 * @param k the number of target neighbours per example
		 */
		void set_k(const int32_t k);

		/** get regularization
		 *
		 * @return regularization strength
		 */
		float64_t get_regularization() const;

		/** set regularization
		 *
		 * @param regularization regularization strength to set
		 */
		void set_regularization(const float64_t regularization);

		/** get step size
		 *
		 * @return step size
		 */
		float64_t get_stepsize() const;

		/** set step size
		 *
		 * @param stepsize step size to set
		 */
		void set_stepsize(const float64_t stepsize);

		/** get step size threshold
		 *
		 * @return step size threshold
		 */
		float64_t get_stepsize_threshold() const;

		/** set step size threshold
		 *
		 * @param stepsize_threshold step size threshold to set
		 */
		void set_stepsize_threshold(const float64_t stepsize_threshold);

		/** get maximum number of iterations
		 *
		 * @return maximum number of iterations
		 */
		uint32_t get_maxiter() const;

		/** set maximum number of iterations
		 *
		 * @param maxiter maximum number of iterations to set
		 */
		void set_maxiter(const uint32_t maxiter);

		/** get number of iterations between exact impostors search
		 *
		 * @return iterations between exact impostors search
		 */
		uint32_t get_correction() const;

		/** set number of iterations between exact impostors search
		 *
		 * @param correction iterations between exact impostors search
		 */
		void set_correction(const uint32_t correction);

		/** get objective threshold
		 *
		 * @return objective threshold
		 */
		float64_t get_obj_threshold() const;

		/** set objective threshold
		 *
		 * @param obj_threshold objective threshold to set
		 */
		void set_obj_threshold(const float64_t obj_threshold);

		/** get whether the linear transform will be diagonal
		 *
		 * @return whether the linear transform will be diagonal
		 */
		bool get_diagonal() const;

		/** set whether the linear transform will be diagonal
		 *
		 * @param diagonal whether the linear transform will be diagonal
		 */
		void set_diagonal(const bool diagonal);

		/** get LMNN training statistics
		 *
		 * @return LMNN training statistics
		 */
		CLMNNStatistics* get_statistics() const;

	private:
		/** register parameters */
		void init();

	private:
		/** the linear transform learnt by LMNN once train has been called */
		SGMatrix<float64_t> m_linear_transform;

		/** training features */
		CFeatures* m_features;

		/** training labels */
		CLabels* m_labels;

		/**
		 * trade-off between pull and push forces in the objective.
		 * Its default value is 0.5
		 */
		float64_t m_regularization;

		/** number of target neighbours to use per training example */
		int32_t m_k;

		/**
		 * learning rate or step size used in gradient descent.
		 * Its deafult value is 1e-07.
		 */
		float64_t m_stepsize;

		/**
		 * step size threshold; during training the step size is modified
		 * internally, stop training if the step size is below this threshold.
		 * Its default value is 1e-22.
		 */
		float64_t m_stepsize_threshold;

		/** maximum number of iterations. Its default value is 1000. */
		uint32_t m_maxiter;

		/**
		 * number of iterations between exact computation of impostors.
		 * Its default value is 15
		 */
		uint32_t m_correction;

		/**
		 * objective threshold; stop training if the first order difference in
		 * absolute value of the objective function in the last three iterations
		 * is below (element-wise) this threshold times the current objective.
		 * Its default value is 1e-9.
		 */
		float64_t m_obj_threshold;

		/**
		 * whether m_linear_transform is forced to be diagonal (useful to
		 * perform feature selection). Its default value is false.
		 */
		bool m_diagonal;

		/** training statistics, @see CLMNNStatistics */
		CLMNNStatistics* m_statistics;

}; /* class CLMNN */

/**
 * @brief Class LMNNStatistics used to give access to intermediate results
 * obtained training LMNN.
 */
class CLMNNStatistics : public CSGObject
{
	public:
		/** default constructor */
		CLMNNStatistics();

		/** destructor */
		virtual ~CLMNNStatistics();

		/** @return name of SGSerializable */
		virtual const char* get_name() const;

		/**
		 * resize CLMNNStatistics::obj, CLMNNStatistics::stepsize and
		 * CLMNNStatistics::num_impostors to fit the specified number of elements
		 *
		 * @param size number of elements
		 */
		void resize(int32_t size);

		/**
		 * set objective, step size and number of impostors computed at the
		 * specified iteration
		 *
		 * @param iter index to store the parameters, must be greater or equal to zero,
		 * and less than the size
		 * @param obj_iter objective to set
		 * @param stepsize_iter stepsize to set
		 * @param num_impostors_iter number of impostors to set
		 */
		void set(index_t iter, float64_t obj_iter, float64_t stepsize_iter, uint32_t num_impostors_iter);

	private:
		/** register parameters */
		void init();

	public:
		/** objective function at each iteration */
		SGVector<float64_t> obj;

		/** step size at each iteration */
		SGVector<float64_t> stepsize;

		/** number of impostors at each iteration */
		SGVector<uint32_t> num_impostors;
};

} /* namespace shogun */

#endif /* HAVE_LAPACK */
#endif /* HAVE_EIGEN3 */

#endif /* LMNN_H_ */