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//
// Belos: Block Linear Solvers Package
// Copyright 2004 Sandia Corporation
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//@HEADER
#ifndef BELOS_EPETRA_ADAPTER_HPP
#define BELOS_EPETRA_ADAPTER_HPP
/*! \file BelosEpetraAdapter.hpp
\brief Provides several interfaces between Belos virtual classes and Epetra concrete classes.
*/
#include "Epetra_MultiVector.h"
#include "Epetra_Operator.h"
#include "Epetra_Map.h"
#include "Epetra_LocalMap.h"
#include "Teuchos_SerialDenseMatrix.hpp"
#include "BelosConfigDefs.hpp"
#include "BelosMultiVec.hpp"
#include "BelosOperator.hpp"
#include "BelosTypes.hpp"
#ifdef HAVE_BELOS_TSQR
// This header file actually lives in the Tpetra package.
//
// mfh 07 Sep 2012: Back in 2010, I had to put Epetra's TSQR adapter
// in Tpetra. This was because an external software package was
// linking to Epetra without using Trilinos' Makefile.export mechanism
// to consider which Trilinos libraries to use. Making Epetra
// optionally depend on Kokkos (to make TSQR work) changed the list of
// libraries, and that software package wasn't doing the right thing
// to adjust. In any case, I chose at the time to put Epetra's TSQR
// adapter in Tpetra, since Tpetra already had an optional dependency
// on Epetra. So, for better or worse, you won't be able to use TSQR
// with Epetra unless you enable both Epetra and Tpetra in your
// Trilinos build. HAVE_BELOS_TSQR will correctly reflect this: it
// won't be defined unless both Epetra and Tpetra are enabled in your
// Trilinos build.
# include <Epetra_TsqrAdaptor.hpp>
#endif // HAVE_BELOS_TSQR
#if defined(HAVE_TEUCHOSCORE_CXX11)
#define BELOSEPETRACOPY Epetra_DataAccess::Copy
#define BELOSEPETRAVIEW Epetra_DataAccess::View
#else
#define BELOSEPETRACOPY ::Copy
#define BELOSEPETRAVIEW ::View
#endif
namespace Belos {
//! @name Epetra Adapter Exceptions
//@{
/** \brief EpetraMultiVecFailure is thrown when a return value from an Epetra
* call on an Epetra_MultiVector is non-zero.
*/
class EpetraMultiVecFailure : public BelosError {public:
EpetraMultiVecFailure(const std::string& what_arg) : BelosError(what_arg)
{}};
/** \brief EpetraOpFailure is thrown when a return value from an Epetra
* call on an Epetra_Operator is non-zero.
*/
class EpetraOpFailure : public BelosError {public:
EpetraOpFailure(const std::string& what_arg) : BelosError(what_arg)
{}};
//@}
/// \class EpetraMultiVec
/// \brief Implementation of Belos::MultiVec using Epetra_MultiVector.
///
/// Belos::MultiVec offers a simple abstract interface for
/// multivector operations in Belos solver algorithms. This class
/// implements Belos::MultiVec by extending Epetra_MultiVector.
class EpetraMultiVec : public MultiVec<double>, public Epetra_MultiVector {
public:
// constructors
EpetraMultiVec(const Epetra_BlockMap& Map_in, double * array, const int numvecs, const int stride=0);
EpetraMultiVec(const Epetra_BlockMap& Map_in, const int numvecs, bool zeroOut=true);
EpetraMultiVec(Epetra_DataAccess CV_in, const Epetra_MultiVector& P_vec, const std::vector<int>& index);
EpetraMultiVec& operator=(const EpetraMultiVec& pv) { Epetra_MultiVector::operator=(pv); return *this; }
EpetraMultiVec(const Epetra_MultiVector & P_vec);
~EpetraMultiVec();
//! @name Member functions inherited from Belos::MultiVec
//@{
/// A virtual "copy constructor" that returns a pointer to a new
/// object of the pure virtual class. This vector's entries are
/// not copied; instead, a new MultiVec is created with the same
/// data distribution, but with numvecs columns (numvecs > 0).
///
/// \param numvecs [in] The number of columns in the output
/// multivector. Must be positive.
MultiVec<double> * Clone ( const int numvecs ) const;
/// A virtual "copy constructor" returning a pointer to a new
/// object of the pure virtual class. This vector's entries are
/// copied and a new stand-alone multivector is created. (deep
/// copy).
MultiVec<double> * CloneCopy () const;
/// A virtual "copy constructor" returning a pointer to the pure
/// virtual class. This vector's entries are copied and a new
/// stand-alone MultiVector is created where only selected columns
/// are chosen. (deep copy).
MultiVec<double> * CloneCopy ( const std::vector<int>& index ) const;
/// A virtual view "constructor" returning a pointer to the pure
/// virtual class. This vector's entries are shared and hence no
/// memory is allocated for the columns.
MultiVec<double> * CloneViewNonConst ( const std::vector<int>& index );
/// A virtual view constructor returning a pointer to the pure
/// virtual class. This vector's entries are shared and hence no
/// memory is allocated for the columns.
const MultiVec<double> * CloneView ( const std::vector<int>& index ) const;
/// Set a subblock of the multivector, which need not be
/// contiguous, and is given by the indices.
void SetBlock ( const MultiVec<double>& A, const std::vector<int>& index );
//! The number of rows in the multivector.
ptrdiff_t GetGlobalLength () const
{
if ( Map().GlobalIndicesLongLong() )
return static_cast<ptrdiff_t>( GlobalLength64() );
else
return static_cast<ptrdiff_t>( GlobalLength() );
}
//! The number of columns in the multivector.
int GetNumberVecs () const { return NumVectors(); }
//! *this <- alpha * A * B + beta * (*this)
void MvTimesMatAddMv ( const double alpha, const MultiVec<double>& A,
const Teuchos::SerialDenseMatrix<int,double>& B, const double beta );
//! *this <- alpha * A + beta * B
void MvAddMv ( const double alpha, const MultiVec<double>& A, const double beta,
const MultiVec<double>& B);
//! Scale each element of the vectors in \c *this with \c alpha.
void MvScale ( const double alpha ) {
TEUCHOS_TEST_FOR_EXCEPTION( this->Scale( alpha )!=0, EpetraMultiVecFailure,
"Belos::EpetraMultiVec::MvScale() call to Scale() returned a nonzero value."); }
//! Scale each element of the \c i-th vector in \c *this with \c alpha[i].
void MvScale ( const std::vector<double>& alpha );
//! B <- alpha * A^T * (*this)
void MvTransMv ( const double alpha, const MultiVec<double>& A, Teuchos::SerialDenseMatrix<int,double>& B ) const;
//! b[i] = A[i]^T * this[i]
void MvDot ( const MultiVec<double>& A, std::vector<double>& b ) const;
//! alpha[i] = norm of i-th column of (*this)
void MvNorm ( std::vector<double>& normvec, NormType norm_type = TwoNorm ) const;
//! Fill all columns of *this with random values.
void MvRandom() {
TEUCHOS_TEST_FOR_EXCEPTION( Random()!=0, EpetraMultiVecFailure,
"Belos::EpetraMultiVec::MvRandom() call to Random() returned a nonzero value."); }
//! Initialize each element of (*this) to the scalar value alpha.
void MvInit ( const double alpha ) {
TEUCHOS_TEST_FOR_EXCEPTION( PutScalar(alpha)!=0, EpetraMultiVecFailure,
"Belos::EpetraMultiVec::MvInit() call to PutScalar() returned a nonzero value."); }
//! Print (*this) to the given output stream.
void MvPrint( std::ostream& os ) const { os << *this << std::endl; };
private:
};
/// \class EpetraOp
/// \brief Belos::Operator implementation that wraps an Epetra_Operator instance.
///
/// An instance of this class wraps an Epetra_Operator instance so
/// that it can be handled as a Belos::Operator. Its Apply() method
/// just invokes the underlying Epetra_Operator's Apply().
///
/// Important note on applying the transpose: Epetra_Operator
/// objects, unlike Tpetra or Thyra operators, have a persistent
/// "use the transpose" state. This state can be set or unset using
/// Epetra_Operator::SetUseTranspose(). Epetra_Operator instances
/// are not required to implement applying the transpose. However,
/// if the wrapped Epetra_Operator object does implement applying
/// the transpose, and if its transpose state is set on input,
/// EpetraOp follows the convention that calling Apply() with
/// trans=TRANS (or CONJTRANS) applies the transpose, not the
/// transpose of the transpose. Similarly, calling Apply() with
/// trans=NOTRANS temporary unsets the transpose state, applies the
/// operator, and restores the transpose state on exit. This
/// preserves the historical behavior of Belos' Epetra interface,
/// without permanently changing the state of the operator.
///
class EpetraOp : public virtual Operator<double> {
public:
/// \brief Constructor.
///
/// \param Op [in] The Epetra_Operator instance to wrap.
EpetraOp (const Teuchos::RCP<Epetra_Operator> &Op);
//! Destructor.
~EpetraOp () {}
//! Apply the operator (or its transpose) to x and put the result in y.
void Apply (const MultiVec<double>& x,
MultiVec<double>& y,
ETrans trans=NOTRANS) const;
//! Whether the operator knows how to apply its transpose.
bool HasApplyTranspose() const;
private:
Teuchos::RCP<Epetra_Operator> Epetra_Op;
};
/// \class EpetraPrecOp
/// \brief Belos::Operator implementation that wraps Epetra_Operator as a preconditioner.
///
/// An instance of this class wraps an \c Epetra_Operator, when the
/// wrapped operator is a preconditioner or other object that is
/// normally applied using ApplyInverse(). EpetraPrecOp's \c
/// Apply() method thus invokes the underlying object's
/// Epetra_Operator::ApplyInverse() method, and its \c
/// ApplyInverse() method invokes the underlying object's
/// Epetra_Operator::Apply() method.
///
/// EpetraPrecOp implements both \c Belos::Operator and
/// Epetra_Operator. Thus, you can use it in Belos' templated
/// solvers with either the OP = Belos::Operator or OP =
/// Epetra_Operator specializations.
///
class EpetraPrecOp :
public virtual Operator<double>,
public virtual Epetra_Operator
{
public:
/// Basic constructor.
///
/// \param Op [in/out] The operator to wrap. EpetraPrecOp's
/// Apply() method will invoke this operator's ApplyInverse()
/// method, and vice versa.
EpetraPrecOp (const Teuchos::RCP<Epetra_Operator>& Op);
//! Virtual destructor, for memory safety of derived classes.
virtual ~EpetraPrecOp() {};
/// \brief Apply the operator (or its transpose) to x, putting the result in y.
///
/// This method is part of the Belos::MultiVec implementation.
/// EpetraPrecOp's Apply() methods invoke the underlying
/// operator's ApplyInverse() method.
///
/// All Epetra operators are real-valued, never complex-valued, so
/// setting either trans=CONJTRANS or trans=TRANS means that this
/// method will attempt to apply the transpose. If you attempt to
/// apply the transpose, EpetraPrecOp will invoke the underlying
/// operator's SetUseTranspose() method. This may or may not
/// succeed. If it does <i>not</i> succeed, this method will
/// throw an \c EpetraOpFailure exception. Furthermore, if the
/// underlying operator's ApplyInverse() method does not succeed
/// (i.e., returns a nonzero error code), this method will throw
/// an \c EpetraOpFailure exception.
///
/// \note The trans argument will always have its literal meaning,
/// even if the underlying Epetra_Operator's transpose flag is
/// set (i.e., if UseTranspose()==true). Implementing this
/// requires temporarily changing the transpose flag of the
/// underlying operator. However, the flag will be changed back
/// to its original value before this method returns, whatever
/// that original value was. This behavior is <i>different</i>
/// than that of the two-argument version of Apply() below,
/// because the three-argument version of Apply() here
/// implements the Belos::Operator and Belos::OperatorTraits
/// interfaces. Those interfaces expect the transpose-ness of
/// the operator to be stateless.
void
Apply (const MultiVec<double>& x,
MultiVec<double>& y,
ETrans trans=NOTRANS) const;
//! Whether the operator knows how to apply its transpose.
bool HasApplyTranspose() const;
/// \brief Apply the operator to x, putting the result in y.
///
/// This method is part of the Epetra_MultiVector implementation.
/// EpetraPrecOp's Apply() methods invoke the underlying
/// operator's ApplyInverse() method. This version of Apply()
/// does <i>not</i> attempt to check for errors, but it returns
/// the error code that the underlying operator's ApplyInverse()
/// method returns.
///
/// \note If the underlying operator's transpose flag is set
/// (i.e., if UseTranspose() returns true), then EpetraPrecOp
/// will apply the transpose of the inverse. This behavior is
/// <i>different</i> than that of the three-argument version of
/// Apply() above. This is so because the two-argument version
/// of Apply() implements Epetra_Operator, which expects the
/// effect of SetUseTranspose() to persist for all subsequent
/// calls to Apply() and ApplyInverse().
///
/// \return Zero if successful, else nonzero. The value of the
/// error code is the same as would be returned by the
/// underlying operator's ApplyInverse() method.
int
Apply (const Epetra_MultiVector &X,
Epetra_MultiVector &Y) const;
/// \brief Apply inverse method for an Epetra_MultiVector.
///
/// This method is part of the Epetra_MultiVector implementation.
/// EpetraPrecOp's ApplyInverse() method invokes the underlying
/// operator's Apply() method. This method does <i>not</i>
/// attempt to check for errors, but it returns the error code
/// that the underlying operator's Apply() method returns.
///
/// \note If the underlying operator's transpose flag is set
/// (i.e., if UseTranspose() returns true), then EpetraPrecOp
/// will apply the transpose of the underlying operator. This
/// behavior is the same as that of the two-argument version of
/// Apply(), for the same reason as discussed in that method's
/// documentation.
///
/// \return Zero if successful, else nonzero. The value of the
/// error code is the same as would be returned by the
/// underlying operator's Apply() method.
int
ApplyInverse (const Epetra_MultiVector &X,
Epetra_MultiVector &Y) const;
//! Return a human-readable string describing the operator.
const char* Label() const {
return "Epetra_Operator applying A^{-1} as A";
}
//! Return the current UseTranspose setting.
bool UseTranspose() const {
return Epetra_Op->UseTranspose ();
}
/// \brief If set true, the transpose of this operator will be applied.
///
/// \param UseTranspose_in [in] True if you want to apply the
/// transpose, else false. Epetra operators are real-valued,
/// never complex-valued, so applying the conjugate transpose is
/// the same as applying the transpose.
///
/// \return Zero if setting was successful, else nonzero.
///
/// This method invokes the underlying operator's
/// SetUseTranspose(). That operator returns zero if successful,
/// else nonzero. Note that SetUseTranspose() affects all
/// subsequent applications of the operator, until the next
/// SetUseTranspose() call.
int SetUseTranspose (bool UseTranspose_in) {
return Epetra_Op->SetUseTranspose (UseTranspose_in);
}
/// \brief Return true if this object can provide an approximate inf-norm.
///
/// If this method returns false, then the \c NormInf() method
/// should not be used.
bool HasNormInf () const {
return Epetra_Op->HasNormInf ();
}
/// \brief Return the infinity norm of the global matrix.
///
/// The returned value only makes sense if HasNormInf() == true.
double NormInf() const {
return Epetra_Op->NormInf ();
}
//! Return the Epetra_Comm communicator associated with this operator.
const Epetra_Comm& Comm() const { return Epetra_Op->Comm(); };
//! Return the Epetra_Map object representing the domain of this operator.
const Epetra_Map& OperatorDomainMap() const {
return Epetra_Op->OperatorDomainMap();
}
//! Return the Epetra_Map object representing the range of this operator.
const Epetra_Map& OperatorRangeMap() const {
return Epetra_Op->OperatorRangeMap();
}
private:
//! The underlying operator that this EpetraPrecOp instance wraps.
Teuchos::RCP<Epetra_Operator> Epetra_Op;
};
////////////////////////////////////////////////////////////////////
//
// Implementation of the Belos::MultiVecTraits for Epetra_MultiVector.
//
////////////////////////////////////////////////////////////////////
//! Full specialization of Belos::MultiVecTraits for Epetra_MultiVector.
template<>
class MultiVecTraits<double, Epetra_MultiVector> {
public:
/// \brief Create a new multivector with \c outNumVecs columns.
///
/// The returned Epetra_MultiVector has the same Epetra_Map
/// (distribution over one or more parallel processes) as \c mv.
/// Its entries are not initialized and have undefined values.
static Teuchos::RCP<Epetra_MultiVector>
Clone (const Epetra_MultiVector& mv, const int outNumVecs)
{
TEUCHOS_TEST_FOR_EXCEPTION(
outNumVecs <= 0, std::invalid_argument,
"Belos::MultiVecTraits<double, Epetra_MultiVector>::"
"Clone(mv, outNumVecs = " << outNumVecs << "): "
"outNumVecs must be positive.");
// NOTE (mfh 13 Jan 2011) Anasazi currently lets Epetra fill in
// the entries of the returned multivector with zeros, but Belos
// does not. We retain this different behavior for now, but the
// two versions should be reconciled.
//
// NOTE (mfh 07 Mar 2013) The Tpetra::MultiVector specialization
// of Belos::MultiVecTraits used to fill the returned
// multivector with zeros. In fact, Belos' solvers do not
// require Clone to initialize, because the Epetra_MultiVector
// specialization did not fill with zeros, and almost all of
// Belos' solvers were written to pass tests with Epetra. Thus,
// we should prefer that Clone _not_ initialize the multivector,
// because it wastes time. (We actually observed that Belos
// with Tpetra was spending a lot of time initializing
// multivectors, compared to Belos with Epetra.)
return Teuchos::rcp (new Epetra_MultiVector (mv.Map(), outNumVecs, false));
}
static Teuchos::RCP<Epetra_MultiVector>
CloneCopy (const Epetra_MultiVector& mv)
{
return Teuchos::rcp (new Epetra_MultiVector (mv));
}
static Teuchos::RCP<Epetra_MultiVector>
CloneCopy (const Epetra_MultiVector& mv, const std::vector<int>& index)
{
const int inNumVecs = GetNumberVecs (mv);
const int outNumVecs = index.size();
// Simple, inexpensive tests of the index vector.
TEUCHOS_TEST_FOR_EXCEPTION(outNumVecs == 0, std::invalid_argument,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneCopy(mv, index = {}): At least one vector must be"
" cloned from mv.");
if (outNumVecs > inNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneCopy(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): There are " << outNumVecs
<< " indices to copy, but only " << inNumVecs << " columns of mv.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
#ifdef TEUCHOS_DEBUG
// In debug mode, we perform more expensive tests of the index
// vector, to ensure all the elements are in range.
// Dereferencing the iterator is valid because index has length
// > 0.
const int minIndex = *std::min_element (index.begin(), index.end());
const int maxIndex = *std::max_element (index.begin(), index.end());
if (minIndex < 0)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneCopy(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): Indices must be nonnegative, but "
"the smallest index " << minIndex << " is negative.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
if (maxIndex >= inNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneCopy(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): Indices must be strictly less than "
"the number of vectors " << inNumVecs << " in mv; the largest index "
<< maxIndex << " is out of bounds.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
#endif // TEUCHOS_DEBUG
// Cast to nonconst, because Epetra_MultiVector's constructor
// wants a nonconst int array argument. It doesn't actually
// change the entries of the array.
std::vector<int>& tmpind = const_cast< std::vector<int>& > (index);
return Teuchos::rcp (new Epetra_MultiVector (BELOSEPETRACOPY, mv, &tmpind[0], index.size()));
}
static Teuchos::RCP<Epetra_MultiVector>
CloneCopy (const Epetra_MultiVector& mv, const Teuchos::Range1D& index)
{
const int inNumVecs = GetNumberVecs (mv);
const int outNumVecs = index.size();
const bool validRange = outNumVecs > 0 && index.lbound() >= 0 &&
index.ubound() < inNumVecs;
if (! validRange)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::Clone(mv,"
"index=[" << index.lbound() << ", " << index.ubound() << "]): ";
TEUCHOS_TEST_FOR_EXCEPTION(outNumVecs == 0, std::invalid_argument,
os.str() << "Column index range must be nonempty.");
TEUCHOS_TEST_FOR_EXCEPTION(index.lbound() < 0, std::invalid_argument,
os.str() << "Column index range must be nonnegative.");
TEUCHOS_TEST_FOR_EXCEPTION(index.ubound() >= inNumVecs, std::invalid_argument,
os.str() << "Column index range must not exceed "
"number of vectors " << inNumVecs << " in the "
"input multivector.");
}
return Teuchos::rcp (new Epetra_MultiVector (BELOSEPETRACOPY, mv, index.lbound(), index.size()));
}
static Teuchos::RCP<Epetra_MultiVector>
CloneViewNonConst (Epetra_MultiVector& mv, const std::vector<int>& index)
{
const int inNumVecs = GetNumberVecs (mv);
const int outNumVecs = index.size();
// Simple, inexpensive tests of the index vector.
TEUCHOS_TEST_FOR_EXCEPTION(outNumVecs == 0, std::invalid_argument,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneViewNonConst(mv, index = {}): The output view "
"must have at least one column.");
if (outNumVecs > inNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneViewNonConst(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): There are " << outNumVecs
<< " indices to view, but only " << inNumVecs << " columns of mv.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
#ifdef TEUCHOS_DEBUG
// In debug mode, we perform more expensive tests of the index
// vector, to ensure all the elements are in range.
// Dereferencing the iterator is valid because index has length
// > 0.
const int minIndex = *std::min_element (index.begin(), index.end());
const int maxIndex = *std::max_element (index.begin(), index.end());
if (minIndex < 0)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneViewNonConst(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): Indices must be nonnegative, but "
"the smallest index " << minIndex << " is negative.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
if (maxIndex >= inNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneViewNonConst(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): Indices must be strictly less than "
"the number of vectors " << inNumVecs << " in mv; the largest index "
<< maxIndex << " is out of bounds.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
#endif // TEUCHOS_DEBUG
// Cast to nonconst, because Epetra_MultiVector's constructor
// wants a nonconst int array argument. It doesn't actually
// change the entries of the array.
std::vector<int>& tmpind = const_cast< std::vector<int>& > (index);
return Teuchos::rcp (new Epetra_MultiVector (BELOSEPETRAVIEW, mv, &tmpind[0], index.size()));
}
static Teuchos::RCP<Epetra_MultiVector>
CloneViewNonConst (Epetra_MultiVector& mv, const Teuchos::Range1D& index)
{
const bool validRange = index.size() > 0 &&
index.lbound() >= 0 &&
index.ubound() < mv.NumVectors();
if (! validRange)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::CloneView"
"NonConst(mv,index=[" << index.lbound() << ", " << index.ubound()
<< "]): ";
TEUCHOS_TEST_FOR_EXCEPTION(index.size() == 0, std::invalid_argument,
os.str() << "Column index range must be nonempty.");
TEUCHOS_TEST_FOR_EXCEPTION(index.lbound() < 0, std::invalid_argument,
os.str() << "Column index range must be nonnegative.");
TEUCHOS_TEST_FOR_EXCEPTION(index.ubound() >= mv.NumVectors(),
std::invalid_argument,
os.str() << "Column index range must not exceed "
"number of vectors " << mv.NumVectors() << " in "
"the input multivector.");
}
return Teuchos::rcp (new Epetra_MultiVector (BELOSEPETRAVIEW, mv, index.lbound(), index.size()));
}
static Teuchos::RCP<const Epetra_MultiVector>
CloneView (const Epetra_MultiVector& mv, const std::vector<int>& index)
{
const int inNumVecs = GetNumberVecs (mv);
const int outNumVecs = index.size();
// Simple, inexpensive tests of the index vector.
TEUCHOS_TEST_FOR_EXCEPTION(outNumVecs == 0, std::invalid_argument,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneView(mv, index = {}): The output view "
"must have at least one column.");
if (outNumVecs > inNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneView(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): There are " << outNumVecs
<< " indices to view, but only " << inNumVecs << " columns of mv.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
#ifdef TEUCHOS_DEBUG
// In debug mode, we perform more expensive tests of the index
// vector, to ensure all the elements are in range.
// Dereferencing the iterator is valid because index has length
// > 0.
const int minIndex = *std::min_element (index.begin(), index.end());
const int maxIndex = *std::max_element (index.begin(), index.end());
if (minIndex < 0)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneView(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): Indices must be nonnegative, but "
"the smallest index " << minIndex << " is negative.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
if (maxIndex >= inNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"CloneView(mv, index = {";
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1] << "}): Indices must be strictly less than "
"the number of vectors " << inNumVecs << " in mv; the largest index "
<< maxIndex << " is out of bounds.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
#endif // TEUCHOS_DEBUG
// Cast to nonconst, because Epetra_MultiVector's constructor
// wants a nonconst int array argument. It doesn't actually
// change the entries of the array.
std::vector<int>& tmpind = const_cast< std::vector<int>& > (index);
return Teuchos::rcp (new Epetra_MultiVector (BELOSEPETRAVIEW, mv, &tmpind[0], index.size()));
}
static Teuchos::RCP<Epetra_MultiVector>
CloneView (const Epetra_MultiVector& mv, const Teuchos::Range1D& index)
{
const bool validRange = index.size() > 0 &&
index.lbound() >= 0 &&
index.ubound() < mv.NumVectors();
if (! validRange)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::CloneView"
"(mv,index=[" << index.lbound() << ", " << index.ubound()
<< "]): ";
TEUCHOS_TEST_FOR_EXCEPTION(index.size() == 0, std::invalid_argument,
os.str() << "Column index range must be nonempty.");
TEUCHOS_TEST_FOR_EXCEPTION(index.lbound() < 0, std::invalid_argument,
os.str() << "Column index range must be nonnegative.");
TEUCHOS_TEST_FOR_EXCEPTION(index.ubound() >= mv.NumVectors(),
std::invalid_argument,
os.str() << "Column index range must not exceed "
"number of vectors " << mv.NumVectors() << " in "
"the input multivector.");
}
return Teuchos::rcp (new Epetra_MultiVector(BELOSEPETRAVIEW, mv, index.lbound(), index.size()));
}
static ptrdiff_t GetGlobalLength( const Epetra_MultiVector& mv )
{
if (mv.Map().GlobalIndicesLongLong())
return static_cast<ptrdiff_t>( mv.GlobalLength64() );
else
return static_cast<ptrdiff_t>( mv.GlobalLength() );
}
static int GetNumberVecs( const Epetra_MultiVector& mv )
{ return mv.NumVectors(); }
static bool HasConstantStride( const Epetra_MultiVector& mv )
{ return mv.ConstantStride(); }
static void
MvTimesMatAddMv (const double alpha,
const Epetra_MultiVector& A,
const Teuchos::SerialDenseMatrix<int,double>& B,
const double beta,
Epetra_MultiVector& mv)
{
Epetra_LocalMap LocalMap(B.numRows(), 0, mv.Map().Comm());
Epetra_MultiVector B_Pvec(BELOSEPETRAVIEW, LocalMap, B.values(), B.stride(), B.numCols());
const int info = mv.Multiply ('N', 'N', alpha, A, B_Pvec, beta);
TEUCHOS_TEST_FOR_EXCEPTION(
info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvTimesMatAddMv: "
"Epetra_MultiVector::Multiply() returned a nonzero value info=" << info
<< ".");
}
/// \brief <tt>mv := alpha*A + beta*B</tt>
///
/// The Epetra specialization of this method ignores and
/// completely overwrites any NaN or Inf entries in A. Thus, it
/// does <i>not</i> mean the same thing as <tt>mv := 0*mv +
/// alpha*A + beta*B</tt> in IEEE 754 floating-point arithmetic.
/// (Remember that NaN*0 = NaN.)
static void
MvAddMv (const double alpha,
const Epetra_MultiVector& A,
const double beta,
const Epetra_MultiVector& B,
Epetra_MultiVector& mv)
{
const int info = mv.Update (alpha, A, beta, B, 0.0);
TEUCHOS_TEST_FOR_EXCEPTION(info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double, Epetra_MultiVector>::MvAddMv: Call to "
"Update() returned a nonzero value " << info << ".");
}
static void
MvScale (Epetra_MultiVector& mv,
const double alpha)
{
const int info = mv.Scale (alpha);
TEUCHOS_TEST_FOR_EXCEPTION(info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvScale: "
"Epetra_MultiVector::Scale() returned a nonzero value info="
<< info << ".");
}
//! For all columns j of \c mv, set <tt>mv[j] := alpha[j] * mv[j]</tt>.
static void
MvScale (Epetra_MultiVector& mv,
const std::vector<double>& alpha)
{
// Check to make sure the vector has the same number of entries
// as the multivector has columns.
const int numvecs = mv.NumVectors ();
TEUCHOS_TEST_FOR_EXCEPTION(
(int) alpha.size () != numvecs, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvScale: "
"Array alpha of scaling coefficients has " << alpha.size ()
<< " entries, which is not the same as the number of columns "
<< numvecs << " in the input multivector mv.");
int info = 0;
std::vector<int> tmp_index (1, 0);
for (int i = 0; i < numvecs; ++i) {
Epetra_MultiVector temp_vec (BELOSEPETRAVIEW, mv, &tmp_index[0], 1);
info = temp_vec.Scale (alpha[i]);
TEUCHOS_TEST_FOR_EXCEPTION(info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvScale: "
"On column " << (i+1) << " of " << numvecs << ", Epetra_Multi"
"Vector::Scale() returned a nonzero value info=" << info << ".");
tmp_index[0]++;
}
}
//! <tt>B := alpha * A^T * mv</tt>.
static void MvTransMv( const double alpha, const Epetra_MultiVector& A, const Epetra_MultiVector& mv, Teuchos::SerialDenseMatrix<int,double>& B )
{
Epetra_LocalMap LocalMap(B.numRows(), 0, mv.Map().Comm());
Epetra_MultiVector B_Pvec(BELOSEPETRAVIEW, LocalMap, B.values(), B.stride(), B.numCols());
const int info = B_Pvec.Multiply ('T', 'N', alpha, A, mv, 0.0);
TEUCHOS_TEST_FOR_EXCEPTION(info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvTransMv: "
"Epetra_MultiVector::Multiply() returned a nonzero value info="
<< info << ".");
}
//! For all columns j of mv, set <tt>b[j] := mv[j]^T * A[j]</tt>.
static void
MvDot (const Epetra_MultiVector& mv,
const Epetra_MultiVector& A,
std::vector<double>& b)
{
const int info = mv.Dot (A, &b[0]);
TEUCHOS_TEST_FOR_EXCEPTION(info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvDot: "
"Epetra_MultiVector::Dot() returned a nonzero value info="
<< info << ".");
}
//! For all columns j of mv, set <tt>normvec[j] = norm(mv[j])</tt>.
static void
MvNorm (const Epetra_MultiVector& mv,
std::vector<double>& normvec,
NormType type = TwoNorm)
{
if ((int)normvec.size() >= mv.NumVectors()) {
int info = 0;
switch( type ) {
case ( OneNorm ) :
info = mv.Norm1(&normvec[0]);
break;
case ( TwoNorm ) :
info = mv.Norm2(&normvec[0]);
break;
case ( InfNorm ) :
info = mv.NormInf(&normvec[0]);
break;
default:
break;
}
TEUCHOS_TEST_FOR_EXCEPTION(info != 0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::MvNorm: "
"Epetra_MultiVector::Norm() returned a nonzero value info="
<< info << ".");
}
}
static void
SetBlock (const Epetra_MultiVector& A,
const std::vector<int>& index,
Epetra_MultiVector& mv)
{
const int inNumVecs = GetNumberVecs (A);
const int outNumVecs = index.size();
// NOTE (mfh 13 Jan 2011) Belos allows A to have more columns
// than index.size(), in which case we just take the first
// index.size() columns of A. Anasazi requires that A have the
// same number of columns as index.size(). Changing Anasazi's
// behavior should not break existing Anasazi solvers, but the
// tests need to be done.
if (inNumVecs < outNumVecs)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"SetBlock(A, mv, index = {";
if (outNumVecs > 0)
{
for (int k = 0; k < outNumVecs - 1; ++k)
os << index[k] << ", ";
os << index[outNumVecs-1];
}
os << "}): A has only " << inNumVecs << " columns, but there are "
<< outNumVecs << " indices in the index vector.";
TEUCHOS_TEST_FOR_EXCEPTION(true, std::invalid_argument, os.str());
}
// Make a view of the columns of mv indicated by the index std::vector.
Teuchos::RCP<Epetra_MultiVector> mv_view = CloneViewNonConst (mv, index);
// View of columns [0, outNumVecs-1] of the source multivector A.
// If A has fewer columns than mv_view, then create a view of
// the first outNumVecs columns of A.
Teuchos::RCP<const Epetra_MultiVector> A_view;
if (outNumVecs == inNumVecs)
A_view = Teuchos::rcpFromRef (A); // Const, non-owning RCP
else
A_view = CloneView (A, Teuchos::Range1D(0, outNumVecs - 1));
// Assignment calls Epetra_MultiVector::Assign(), which deeply
// copies the data directly, ignoring the underlying
// Epetra_Map(s). If A and mv don't have the same data
// distribution (Epetra_Map), this may result in incorrect or
// undefined behavior. Epetra_MultiVector::Update() also
// ignores the Epetra_Maps, so we might as well just use the
// (perhaps slightly cheaper) Assign() method via operator=().
*mv_view = *A_view;
}
static void
SetBlock (const Epetra_MultiVector& A,
const Teuchos::Range1D& index,
Epetra_MultiVector& mv)
{
const int numColsA = A.NumVectors();
const int numColsMv = mv.NumVectors();
// 'index' indexes into mv; it's the index set of the target.
const bool validIndex = index.lbound() >= 0 && index.ubound() < numColsMv;
// We can't take more columns out of A than A has.
const bool validSource = index.size() <= numColsA;
if (! validIndex || ! validSource)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double, Epetra_MultiVector>::SetBlock"
"(A, index=[" << index.lbound() << ", " << index.ubound() << "], "
"mv): ";
TEUCHOS_TEST_FOR_EXCEPTION(index.lbound() < 0, std::invalid_argument,
os.str() << "Range lower bound must be nonnegative.");
TEUCHOS_TEST_FOR_EXCEPTION(index.ubound() >= numColsMv, std::invalid_argument,
os.str() << "Range upper bound must be less than "
"the number of columns " << numColsA << " in the "
"'mv' output argument.");
TEUCHOS_TEST_FOR_EXCEPTION(index.size() > numColsA, std::invalid_argument,
os.str() << "Range must have no more elements than"
" the number of columns " << numColsA << " in the "
"'A' input argument.");
TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "Should never get here!");
}
// View of columns [index.lbound(), index.ubound()] of the
// target multivector mv. We avoid view creation overhead by
// only creating a view if the index range is different than [0,
// (# columns in mv) - 1].
Teuchos::RCP<Epetra_MultiVector> mv_view;
if (index.lbound() == 0 && index.ubound()+1 == numColsMv)
mv_view = Teuchos::rcpFromRef (mv); // Non-const, non-owning RCP
else
mv_view = CloneViewNonConst (mv, index);
// View of columns [0, index.size()-1] of the source multivector
// A. If A has fewer columns than mv_view, then create a view
// of the first index.size() columns of A.
Teuchos::RCP<const Epetra_MultiVector> A_view;
if (index.size() == numColsA)
A_view = Teuchos::rcpFromRef (A); // Const, non-owning RCP
else
A_view = CloneView (A, Teuchos::Range1D(0, index.size()-1));
// Assignment calls Epetra_MultiVector::Assign(), which deeply
// copies the data directly, ignoring the underlying
// Epetra_Map(s). If A and mv don't have the same data
// distribution (Epetra_Map), this may result in incorrect or
// undefined behavior. Epetra_MultiVector::Update() also
// ignores the Epetra_Maps, so we might as well just use the
// (perhaps slightly cheaper) Assign() method via operator=().
*mv_view = *A_view;
}
static void
Assign (const Epetra_MultiVector& A,
Epetra_MultiVector& mv)
{
const int numColsA = GetNumberVecs (A);
const int numColsMv = GetNumberVecs (mv);
if (numColsA > numColsMv)
{
std::ostringstream os;
os << "Belos::MultiVecTraits<double, Epetra_MultiVector>::Assign"
"(A, mv): ";
TEUCHOS_TEST_FOR_EXCEPTION(numColsA > numColsMv, std::invalid_argument,
os.str() << "Input multivector 'A' has "
<< numColsA << " columns, but output multivector "
"'mv' has only " << numColsMv << " columns.");
TEUCHOS_TEST_FOR_EXCEPTION(true, std::logic_error, "Should never get here!");
}
// View of the first [0, numColsA-1] columns of mv.
Teuchos::RCP<Epetra_MultiVector> mv_view;
if (numColsMv == numColsA)
mv_view = Teuchos::rcpFromRef (mv); // Non-const, non-owning RCP
else // numColsMv > numColsA
mv_view = CloneView (mv, Teuchos::Range1D(0, numColsA - 1));
// Assignment calls Epetra_MultiVector::Assign(), which deeply
// copies the data directly, ignoring the underlying
// Epetra_Map(s). If A and mv don't have the same data
// distribution (Epetra_Map), this may result in incorrect or
// undefined behavior. Epetra_MultiVector::Update() also
// ignores the Epetra_Maps, so we might as well just use the
// (perhaps slightly cheaper) Assign() method via operator=().
*mv_view = A;
}
static void MvRandom (Epetra_MultiVector& mv)
{
TEUCHOS_TEST_FOR_EXCEPTION( mv.Random()!=0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"MvRandom() call to Random() returned a nonzero value.");
}
static void MvInit (Epetra_MultiVector& mv,
double alpha = Teuchos::ScalarTraits<double>::zero())
{
TEUCHOS_TEST_FOR_EXCEPTION( mv.PutScalar(alpha)!=0, EpetraMultiVecFailure,
"Belos::MultiVecTraits<double,Epetra_MultiVector>::"
"MvInit() call to PutScalar() returned a nonzero value.");
}
static void MvPrint (const Epetra_MultiVector& mv, std::ostream& os)
{
os << mv << std::endl;
}
#ifdef HAVE_BELOS_TSQR
/// \typedef tsqr_adaptor_type
/// \brief TsqrAdaptor specialization for Epetra_MultiVector
///
typedef Epetra::TsqrAdaptor tsqr_adaptor_type;
#endif // HAVE_BELOS_TSQR
};
////////////////////////////////////////////////////////////////////
//
// Implementation of the Belos::OperatorTraits for Epetra_Operator.
//
////////////////////////////////////////////////////////////////////
//! Specialization of OperatorTraits for Epetra_Operator.
template <>
class OperatorTraits <double, Epetra_MultiVector, Epetra_Operator>
{
public:
/// \brief Specialization of Apply() for Epetra_Operator.
///
/// This method throws an EpetraOpFailure on failure. It fails in
/// either of the following two cases:
/// 1. If the operator's Epetra_Operator::Apply() method fails
/// (which it indicates by returning a nonzero value).
/// 2. If you attempt to apply the transpose and the underlying
/// operator does not implement the transpose.
///
/// Epetra_Operator objects have a "persistent" transpose state,
/// which means that the input Op might already be set to use the
/// transpose. We assume in that case that trans=NOTRANS means
/// don't apply the transpose, and trans=TRANS means apply the
/// transpose (not the "transpose of the transpose"). Thus, trans
/// has its literal meaning. However, we leave Op on exit of this
/// routine with the same transpose setting that it had on entry.
///
/// \note If you want to implement an operator that applies the
/// transpose to an existing operator A in a reversed sense
/// (i.e., "transposed" means not transposed, and "not
/// transposed" means transposed), you should write a class
/// implementing Epetra_Operator that wraps A. This class
/// should implement `Epetra_Operator::UseTranspose()` by
/// returning `!(A->UseTranspose())`, and should implement
/// `Epetra_Operator::SetUseTranspose(useTrans)` by calling
/// `A->SetUseTranspose(!useTrans)`.
static void
Apply (const Epetra_Operator& Op,
const Epetra_MultiVector& x,
Epetra_MultiVector& y,
ETrans trans=NOTRANS);
//! Whether Op implements applying the transpose.
static bool
HasApplyTranspose (const Epetra_Operator& Op);
};
} // end of Belos namespace
#endif
// end of file BELOS_EPETRA_ADAPTER_HPP
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