This file is indexed.

/usr/include/trilinos/Epetra_SerialDenseVector.h is in libtrilinos-epetra-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
/*
//@HEADER
// ************************************************************************
//
//               Epetra: Linear Algebra Services Package
//                 Copyright 2011 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER
*/

#ifndef EPETRA_SERIALDENSEVECTOR_H
#define EPETRA_SERIALDENSEVECTOR_H

#include "Epetra_Object.h"
#include "Epetra_SerialDenseMatrix.h"

//! Epetra_SerialDenseVector: A class for constructing and using dense vectors.

/*! The Epetra_SerialDenseVector class enables the construction and use of real-valued,
    double-precision dense vectors.  It is built on the BLAS and LAPACK and derives from the Epetra_SerialDenseMatrix class.

The Epetra_SerialDenseVector class is intended to provide convenient vector notation but derives all signficant
functionality from Epetra_SerialDenseMatrix.

<b>Constructing Epetra_SerialDenseVector Objects</b>

There are four Epetra_SerialDenseVector constructors.  The first constructs a zero-length object which should be made
to appropriate length using the Size() or Resize() functions and then filled with the [] or () operators.
The second constructs an object sized to the dimension specified, which should be filled with the [] or () operators.
The third is a constructor that accepts user
data as a 1D array, and the fourth is a copy constructor. The third constructor has
two data access modes (specified by the Epetra_DataAccess argument):
<ol>
  <li> Copy mode - Allocates memory and makes a copy of the user-provided data. In this case, the
       user data is not needed after construction.
  <li> View mode - Creates a "view" of the user data. In this case, the
       user data is required to remain intact for the life of the object.
</ol>

\warning View mode is \e extremely dangerous from a data hiding perspective.
Therefore, we strongly encourage users to develop code using Copy mode first and
only use the View mode in a secondary optimization phase.

<b>Extracting Data from Epetra_SerialDenseVector Objects</b>

Once a Epetra_SerialDenseVector is constructed, it is possible to view the data via access functions.

\warning Use of these access functions cam be \e extremely dangerous from a data hiding perspective.


The final useful function is Flops().  Each Epetra_SerialDenseVector object keep track of the number
of \e serial floating point operations performed using the specified object as the \e this argument
to the function.  The Flops() function returns this number as a double precision number.  Using this
information, in conjunction with the Epetra_Time class, one can get accurate parallel performance
numbers.


*/


//=========================================================================
class EPETRA_LIB_DLL_EXPORT Epetra_SerialDenseVector : public Epetra_SerialDenseMatrix{

  public:

    //! @name Constructors/destructors
  //@{
  //! Default constructor; defines a zero size object.
  /*!
    Epetra_SerialDenseVector objects defined by the default constructor should be sized with the
    Size() or Resize functions.
    Values should be defined by using the [] or () operators.
   */
  Epetra_SerialDenseVector();

  //! Sized constructor; defines a variable-sized object
  /*!
    \param In
           Length - Length of vector.

    Epetra_SerialDenseVector objects defined by the sized constructor are already sized to the
		dimension given as a parameter. All values are initialized to 0. Calling this constructor
		is equivalent to using the default constructor, and then calling the Size function on it.
    Values should be defined by using the [] or () operators.
   */
  Epetra_SerialDenseVector(int Length);

  //! Set object values from one-dimensional array.
  /*!
    \param In
           Epetra_DataAccess - Enumerated type set to Copy or View.
    \param In
           Values - Pointer to an array of double precision numbers containing the values.
    \param In
           Length - Length of vector.

	   See Detailed Description section for further discussion.
  */
  Epetra_SerialDenseVector(Epetra_DataAccess CV, double* Values, int Length);

  //! Epetra_SerialDenseVector copy constructor.

  Epetra_SerialDenseVector(const Epetra_SerialDenseVector& Source);


  //! Epetra_SerialDenseVector destructor.
  virtual ~Epetra_SerialDenseVector ();
  //@}

  //! @name Post-construction modification routines
  //@{

  //! Set length of a Epetra_SerialDenseVector object; init values to zero.
  /*!
    \param In
           Length - Length of vector object.

	   Allows user to define the dimension of a Epetra_SerialDenseVector. This function can
	   be called at any point after construction.  Any values that were previously in this object are
	   destroyed and the resized vector starts off with all zero values.

    \return Integer error code, set to 0 if successful.
  */
  int Size(int Length_in) {return(Epetra_SerialDenseMatrix::Shape(Length_in, 1));};

  //! Resize a Epetra_SerialDenseVector object.
  /*!
    \param In
           Length - Length of vector object.

	   Allows user to define the dimension of a Epetra_SerialDenseVector. This function can
	   be called at any point after construction.  Any values that were previously in this object are
	   copied into the new size.  If the new shape is smaller than the original, the first Length values
	   are copied to the new vector.

    \return Integer error code, set to 0 if successful.
  */
  int Resize(int Length_in) {return(Epetra_SerialDenseMatrix::Reshape(Length_in, 1));};

  //@}

  //! @name Element access methods
  //@{
  //! Value copy from one vector to another.
  /*!
    The operator= allows one to copy the values from one existing SerialDenseVector to another, as
    long as there is enough room in the target to hold the source.

    \return Values of the left hand side vector are modified by the values of the right hand side vector.
  */
    Epetra_SerialDenseVector& operator = (const Epetra_SerialDenseVector& Source);

    //let the compiler know we intend to overload the base-class function
    //operator() rather than hide it.
    using Epetra_SerialDenseMatrix::operator();

  //! Element access function.
  /*!
    Returns the specified element of the vector.  Bounds checking is enforced.
    \return Specified element in vector.

    \warning No bounds checking is done unless Epetra is compiled with HAVE_EPETRA_ARRAY_BOUNDS_CHECK.
  */
    double& operator () (int Index);

  //! Element access function.
  /*!
    Returns the specified element of the vector.  Bounds checking is enforced.
    \return Specified element in vector.

    \warning No bounds checking is done unless Epetra is compiled with HAVE_EPETRA_ARRAY_BOUNDS_CHECK.
  */
    const double& operator () (int Index) const;

  //! Element access function.
  /*!
    Returns the specified element of the vector.
    \return Specified element in vector.

    \warning No bounds checking is done unless Epetra is compiled with HAVE_EPETRA_ARRAY_BOUNDS_CHECK.
  */
    double& operator [] (int Index);

  //! Column access function.
  /*!
    Returns the specified element of the vector.
    \return Specified element in vector.

    \warning No bounds checking is done unless Epetra is compiled with HAVE_EPETRA_ARRAY_BOUNDS_CHECK.
  */
    const double& operator [] (int Index) const;

  //@}

  //! @name Mathematical methods
  //@{
  //! Set vector values to random numbers.
  /*!
		SerialDenseVector uses the random number generator provided by Epetra_Util.
		The vector values will be set to random values on the interval (-1.0, 1.0).

    \return Integer error code, set to 0 if successful.
  */
  int Random();

  //! Compute 1-norm of each vector in multi-vector.
  /*!
    \param x (In) Input vector x.

    \return Dot-product of the \e this vector and x.
  */
  double Dot(const Epetra_SerialDenseVector & x) const;

  //! Compute 1-norm of each vector in multi-vector.
  /*!
    \return 1-norm of the vector.
  */
  double Norm1() const;

  //! Compute 2-norm of each vector in multi-vector.
  /*!
    \param Out
    \return 2-norm of the vector.
  */
  double Norm2() const;

  //! Compute Inf-norm of each vector in multi-vector.
  /*!
    \return Infinity-norm of the vector.
  */
  double NormInf() const;

  //@}

  //! @name Attribute access methods
  //@{
  //! Returns length of vector.
  int Length() const {return(M_);};

  //! Returns pointer to the values in vector.
  double* Values() const {return(A_);};

	//! Returns the data access mode of the \e this vector.
	Epetra_DataAccess CV() const {return(CV_);};

  //@}

  //! @name I/O methods
  //@{
  //! Print service methods; defines behavior of ostream << operator.
  virtual void Print(std::ostream& os) const;
  //@}
};

// inlined definitions of op() and op[]
//=========================================================================
inline double& Epetra_SerialDenseVector::operator() (int Index)  {
#ifdef HAVE_EPETRA_ARRAY_BOUNDS_CHECK
  if (Index >= M_ || Index < 0)
		throw ReportError("Index = " +toString(Index) + " Out of Range 0 - " + toString(M_-1), -1);
#endif
  return(A_[Index]);
}
//=========================================================================
inline const double& Epetra_SerialDenseVector::operator() (int Index) const  {
#ifdef HAVE_EPETRA_ARRAY_BOUNDS_CHECK
  if (Index >= M_ || Index < 0)
		throw ReportError("Index = " +toString(Index) + " Out of Range 0 - " + toString(M_-1), -1);
#endif
   return(A_[Index]);
}
//=========================================================================
inline double& Epetra_SerialDenseVector::operator [] (int Index)  {
#ifdef HAVE_EPETRA_ARRAY_BOUNDS_CHECK
  if (Index >= M_ || Index < 0)
		throw ReportError("Index = " +toString(Index) + " Out of Range 0 - " + toString(M_-1), -1);
#endif
   return(A_[Index]);
}
//=========================================================================
inline const double& Epetra_SerialDenseVector::operator [] (int Index) const  {
#ifdef HAVE_EPETRA_ARRAY_BOUNDS_CHECK
  if (Index >= M_ || Index < 0)
		throw ReportError("Index = " +toString(Index) + " Out of Range 0 - " + toString(M_-1), -1);
#endif
   return(A_[Index]);
}
//=========================================================================

#endif /* EPETRA_SERIALDENSEVECTOR_H */