This file is indexed.

/usr/include/trilinos/Epetra_VbrRowMatrix.h is in libtrilinos-epetra-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
/*
//@HEADER
// ************************************************************************
//
//               Epetra: Linear Algebra Services Package
//                 Copyright 2011 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER
*/

#ifndef EPETRA_VBRROWMATRIX_H
#define EPETRA_VBRROWMATRIX_H

#include "Epetra_BasicRowMatrix.h"
#include "Epetra_VbrMatrix.h"
#include "Epetra_Map.h"
#include "Epetra_Comm.h"
#include "Epetra_Vector.h"
#include "Epetra_MultiVector.h"

//! Epetra_VbrRowMatrix: A class for using an existing Epetra_VbrMatrix object as an Epetra_RowMatrix object.

/*! The Epetra_VbrRowMatrix class takes an existing Epetra_VbrMatrix object and allows its
    use as an Epetra_RowMatrix without allocating additional storage.  Although the Epetra_VbrMatrix itself
    inherits from Epetra_RowMatrix, a design flaw in the inheritance structure of Epetra prohibits the use of
    an Epetra_VbrMatrix object as an Epetra_RowMatrix in some important situations.  Therefore we recommend the
    use of this class to wrap an Epetra_VbrMatrix object.

    \warning This class takes a pointer to an existing Epetra_VbrMatrix object.  It is assumed that the user
    will pass in a pointer to a valid Epetra_VbrMatrix object, and will retain it throughout the life of the
    Epetra_VbrRowMatrix object.

*/

class Epetra_VbrRowMatrix: public Epetra_BasicRowMatrix {

 public:

   //! @name Constructors/Destructor
  //@{
  //! Epetra_VbrRowMatrix constuctor.
  /* The constructor for this class requires a pointer to a fully constructed instance of an Epetra_VbrMatrix
     object.
     \param Matrix (In) Pointer to an existing Epetra_VbrMatrix. The input matrix must be retained by the user
     throughout the existance of the dependent Epetra_VbrRowmatrix object.
     \pre Matrix must have Matrix->Filled()==true.
  */
  Epetra_VbrRowMatrix(Epetra_VbrMatrix * Matrix): Epetra_BasicRowMatrix(Matrix->Comm()), matrix_(Matrix) {
  if (Matrix==0) throw Matrix->RowMatrixRowMap().ReportError("Input matrix must have called FillComplete()", -1);
  SetMaps(Matrix->RowMatrixRowMap(), Matrix->RowMatrixColMap(), Matrix->OperatorDomainMap(), Matrix->OperatorRangeMap());
  if (!Matrix->Filled()) throw Matrix->RowMatrixRowMap().ReportError("Input matrix must have called FillComplete()", -1);
  SetLabel("Epetra::VbrRowMatrix");
}

  //! Epetra_VbrRowMatrix Destructor
    virtual ~Epetra_VbrRowMatrix(){}
  //@}

  //! @name Post-construction modifications
  //@{
  //! Update the matrix to which this object points.
  /* Updates the matrix that the Epetra_VbrRowMatrix will use to satisfy the Epetra_RowMatrix functionality.
     \param Matrix (In) A pointer to an existing, fully constructed Epetra_VbrMatrix.
     \pre Matrix must have Matrix->Filled()==true.
  */
  int UpdateMatrix(Epetra_VbrMatrix * Matrix){
    if (Matrix ==0) {
      EPETRA_CHK_ERR(-1);
    }
    else matrix_ = Matrix;
    return(0);
  }
  //@}

  //! @name Methods required for implementing Epetra_BasicRowMatrix
  //@{

    //! Returns a copy of the specified local row in user-provided arrays.
    /*!
    \param MyRow (In) - Local row to extract.
    \param Length (In) - Length of Values and Indices.
    \param NumEntries (Out) - Number of nonzero entries extracted.
    \param Values (Out) - Extracted values for this row.
    \param Indices (Out) - Extracted global column indices for the corresponding values.
	
    \return Integer error code, set to 0 if successful, set to -1 if MyRow not valid, -2 if Length is too short (NumEntries will have required length).
  */
  int ExtractMyRowCopy(int MyRow, int Length, int & NumEntries, double *Values, int * Indices) const {

    EPETRA_CHK_ERR(matrix_->ExtractMyRowCopy(MyRow, Length, NumEntries, Values, Indices));
    return(0);
  }

    //! Returns a reference to the ith entry in the matrix, along with its row and column index
    /*!
    \param CurEntry (In) - Local entry to extract.
    \param Value (Out) - Extracted reference to current values.
    \param RowIndex (Out) - Row index for current entry.
    \param ColIndex (Out) - Column index for current entry.
	
    \return Integer error code, set to 0 if successful, set to -1 if CurEntry not valid.
  */
    int ExtractMyEntryView(int CurEntry, double * &Value, int & RowIndex, int & ColIndex) {
      return(-1);
    }

    //! Returns a const reference to the ith entry in the matrix, along with its row and column index.
    /*!
    \param CurEntry (In) - Local entry to extract.
    \param Value (Out) - Extracted reference to current values.
    \param RowIndex (Out) - Row index for current entry.
    \param ColIndex (Out) - Column index for current entry.
	
    \return Integer error code, set to 0 if successful, set to -1 if CurEntry not valid.
  */
    int ExtractMyEntryView(int CurEntry, double const * & Value, int & RowIndex, int & ColIndex) const {
      return(-1);
    }

    //! Return the current number of values stored for the specified local row.
    /*! Similar to NumMyEntries() except NumEntries is returned as an argument
      and error checking is done on the input value MyRow.
      \param MyRow - (In) Local row.
      \param NumEntries - (Out) Number of nonzero values.

      \return Integer error code, set to 0 if successful, set to -1 if MyRow not valid.
      \pre None.
      \post Unchanged.
    */
    int NumMyRowEntries(int MyRow, int & NumEntries) const {
      EPETRA_CHK_ERR(matrix_->NumMyRowEntries(MyRow, NumEntries));
      return(0);
    }

    //@}

    //! @name Computational methods
  //@{

    //! Scales the Epetra_VbrMatrix on the right with a Epetra_Vector x.
    /*! The \e this matrix will be scaled such that A(i,j) = x(j)*A(i,j) where i denotes the global row number of A
        and j denotes the global column number of A.
    \param In
	   x -The Epetra_Vector used for scaling \e this.

    \return Integer error code, set to 0 if successful.
  */
    int RightScale(const Epetra_Vector& x){
      HaveNumericConstants_ = false;
      UpdateFlops(NumGlobalNonzeros());
      EPETRA_CHK_ERR(matrix_->RightScale(x));
      return(0);
    }

    //! Scales the Epetra_VbrMatrix on the left with a Epetra_Vector x.
    /*! The \e this matrix will be scaled such that A(i,j) = x(i)*A(i,j) where i denotes the row number of A
        and j denotes the column number of A.
    \param In
	   x -A Epetra_Vector to solve for.

    \return Integer error code, set to 0 if successful.
  */
    int LeftScale(const Epetra_Vector& x){
      HaveNumericConstants_ = false;
      UpdateFlops(NumGlobalNonzeros());
      EPETRA_CHK_ERR(matrix_->LeftScale(x));
      return(0);
    }

    //! Returns the result of a Epetra_VbrRowMatrix multiplied by a Epetra_MultiVector X in Y.
    /*!
    \param In
	   TransA -If true, multiply by the transpose of matrix, otherwise just use matrix.
    \param In
	   X - A Epetra_MultiVector of dimension NumVectors to multiply with matrix.
    \param Out
	   Y -A Epetra_MultiVector of dimension NumVectorscontaining result.

    \return Integer error code, set to 0 if successful.
  */
    int Multiply(bool TransA, const Epetra_MultiVector& X, Epetra_MultiVector& Y) const{
      EPETRA_CHK_ERR(matrix_->Multiply(TransA, X, Y));
      return(0);
    }

    //! Returns the result of a Epetra_VbrRowMatrix solve with a Epetra_MultiVector X in Y (not implemented).
    /*!
    \param In
	   Upper -If true, solve Ux = y, otherwise solve Lx = y.
    \param In
	   Trans -If true, solve transpose problem.
    \param In
	   UnitDiagonal -If true, assume diagonal is unit (whether it's stored or not).
    \param In
	   X - A Epetra_MultiVector of dimension NumVectors to solve for.
    \param Out
	   Y -A Epetra_MultiVector of dimension NumVectors containing result.

    \return Integer error code, set to 0 if successful.
  */
    int Solve(bool Upper, bool Trans, bool UnitDiagonal,
              const Epetra_MultiVector& X,
              Epetra_MultiVector& Y) const {
      EPETRA_CHK_ERR(matrix_->Solve(Upper, Trans, UnitDiagonal, X, Y));
      return(0);
    }  //@}



 private:

    Epetra_VbrMatrix * matrix_;

};
#endif /* EPETRA_VBRROWMATRIX_H */