/usr/include/trilinos/Ifpack2_BandedContainer_def.hpp is in libtrilinos-ifpack2-dev 12.12.1-5.
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// ***********************************************************************
//
// Ifpack2: Tempated Object-Oriented Algebraic Preconditioner Package
// Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
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// modification, are permitted provided that the following conditions are
// met:
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// 1. Redistributions of source code must retain the above copyright
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// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
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//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
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//@HEADER
*/
#ifndef IFPACK2_BANDEDCONTAINER_DEF_HPP
#define IFPACK2_BANDEDCONTAINER_DEF_HPP
#include "Teuchos_LAPACK.hpp"
#include "Tpetra_CrsMatrix.hpp"
#include <iostream>
#include <sstream>
#ifdef HAVE_MPI
# include <mpi.h>
# include "Teuchos_DefaultMpiComm.hpp"
#else
# include "Teuchos_DefaultSerialComm.hpp"
#endif // HAVE_MPI
namespace Ifpack2 {
template<class MatrixType, class LocalScalarType>
BandedContainer<MatrixType, LocalScalarType, true>::
BandedContainer (const Teuchos::RCP<const row_matrix_type>& matrix,
const Teuchos::Array<Teuchos::Array<local_ordinal_type> >& partitions,
const Teuchos::RCP<const import_type>& importer,
int OverlapLevel,
scalar_type DampingFactor) :
Container<MatrixType>(matrix, partitions, importer, OverlapLevel, DampingFactor),
ipiv_(this->partitions_.size()),
kl_(this->numBlocks_, -1),
ku_(this->numBlocks_, -1),
scalars_(nullptr),
scalarOffsets_(this->numBlocks_)
{
TEUCHOS_TEST_FOR_EXCEPTION(
! matrix->hasColMap (), std::invalid_argument, "Ifpack2::BandedContainer: "
"The constructor's input matrix must have a column Map.");
// Check whether the input set of local row indices is correct.
const map_type& rowMap = * (matrix->getRowMap ());
for(int i = 0; i < this->numBlocks_; i++)
{
Teuchos::ArrayView<const local_ordinal_type> localRows = this->getLocalRows(i);
for(local_ordinal_type j = 0; j < this->blockRows_[i]; j++)
{
TEUCHOS_TEST_FOR_EXCEPTION(
!rowMap.isNodeLocalElement(localRows[j]),
std::invalid_argument, "Ifpack2::BandedContainer: "
"On process " << rowMap.getComm ()->getRank () << " of "
<< rowMap.getComm ()->getSize () << ", in the given set of local row "
"indices localRows = " << Teuchos::toString (localRows) << ", the following "
"entry is not valid local row indices on the calling process: "
<< localRows[j] << ".");
}
}
IsInitialized_ = false;
IsComputed_ = false;
}
template<class MatrixType, class LocalScalarType>
BandedContainer<MatrixType, LocalScalarType, true>::
BandedContainer (const Teuchos::RCP<const row_matrix_type>& matrix,
const Teuchos::Array<local_ordinal_type>& localRows) :
Container<MatrixType>(matrix, localRows),
ipiv_(this->blockRows_[0]),
kl_(1, -1),
ku_(1, -1),
scalars_(nullptr),
scalarOffsets_(1, 0)
{
TEUCHOS_TEST_FOR_EXCEPTION(!matrix->hasColMap(), std::invalid_argument, "Ifpack2::BandedContainer: "
"The constructor's input matrix must have a column Map.");
// Check whether the input set of local row indices is correct.
const map_type& rowMap = *(matrix->getRowMap());
for(local_ordinal_type j = 0; j < this->blockRows_[0]; j++)
{
TEUCHOS_TEST_FOR_EXCEPTION(
!rowMap.isNodeLocalElement(localRows[j]),
std::invalid_argument, "Ifpack2::BandedContainer: "
"On process " << rowMap.getComm()->getRank() << " of "
<< rowMap.getComm()->getSize() << ", in the given set of local row "
"indices localRows = " << Teuchos::toString(localRows) << ", the following "
"entry is not valid local row indices on the calling process: "
<< localRows[j] << ".");
}
IsInitialized_ = false;
IsComputed_ = false;
}
template<class MatrixType, class LocalScalarType>
BandedContainer<MatrixType, LocalScalarType, true>::
~BandedContainer ()
{
if(scalars_)
delete[] scalars_;
}
template<class MatrixType, class LocalScalarType>
void BandedContainer<MatrixType, LocalScalarType, true>::
setParameters (const Teuchos::ParameterList& List)
{
typedef typename Teuchos::ArrayView<const local_ordinal_type>::size_type size_type;
if(List.isParameter("relaxation: banded container superdiagonals"))
kl_[0] = List.get<int>("relaxation: banded container superdiagonals");
if(List.isParameter("relaxation: banded container subdiagonals"))
ku_[0] = List.get<int>("relaxation: banded container subdiagonals");
for(local_ordinal_type b = 1; b < this->numBlocks_; b++)
{
kl_[b] = kl_[0];
ku_[b] = ku_[0];
}
// The user provided insufficient information. If this is the case we check for the optimal values.
// User information may be overwritten only if necessary.
for(local_ordinal_type b = 0; b < this->numBlocks_; b++)
{
if (ku_[b] == -1 || kl_[b] == -1)
{
const Teuchos::ArrayView<const local_ordinal_type> localRows = this->getLocalRows(b);
const size_type numRows = localRows.size();
// loop over local rows in current block
for(size_type i = 0; i < numRows; ++i)
{
Teuchos::ArrayView<const local_ordinal_type> indices;
Teuchos::ArrayView<const scalar_type> values;
this->inputMatrix_->getLocalRowView(localRows[i], indices, values);
size_type min_col_it = numRows > 0 ? numRows - 1 : 0; // just a guess
size_type max_col_it = 0;
size_type cntCols = 0;
// loop over all column entries
for(size_type c = 0; c < indices.size(); c++)
{
const local_ordinal_type lColIdx = indices[c]; // current column idx
// check whether lColIdx is contained in localRows[]
for(size_type j = 0; j < numRows; j++)
{
if (localRows[j] == lColIdx)
{
if(localRows[min_col_it] > lColIdx)
min_col_it = j;
if(localRows[max_col_it] < lColIdx)
max_col_it = j;
cntCols++;
}
}
if(cntCols == numRows)
break; // skip remaining entries in column
}
ku_[b] = std::max(ku_[b], Teuchos::as<local_ordinal_type>(max_col_it - i));
kl_[b] = std::max(kl_[b], Teuchos::as<local_ordinal_type>(i - min_col_it));
}
}
TEUCHOS_TEST_FOR_EXCEPTION
(kl_[b] == -1 || ku_[b] == -1, std::invalid_argument,
"Ifpack2::BandedContainer::setParameters: the user must provide the number"
" of sub- and superdiagonals in the 'kl' and 'ku' parameters.");
}
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
initialize ()
{
using Teuchos::null;
using Teuchos::rcp;
for(local_ordinal_type b = 0; b < this->numBlocks_; b++)
{
TEUCHOS_TEST_FOR_EXCEPTION
(kl_[b] == -1 || ku_[b] == -1, std::invalid_argument,
"Ifpack2::BandedContainer::initialize: the user must provide the number of"
" sub- and superdiagonals in the 'kl' and 'ku' parameters. Make sure that "
"you call BandedContainer<T>::setParameters!");
}
global_ordinal_type totalScalars = 0;
for(local_ordinal_type b = 0; b < this->numBlocks_; b++)
{
local_ordinal_type stride = 2 * kl_[b] + ku_[b] + 1;
scalarOffsets_[b] = totalScalars;
totalScalars += stride * this->blockRows_[b];
}
scalars_ = new local_scalar_type[totalScalars];
for(int b = 0; b < this->numBlocks_; b++)
{
local_ordinal_type nrows = this->blockRows_[b];
diagBlocks_.emplace_back(Teuchos::View, scalars_ + scalarOffsets_[b], 2 * kl_[b] + ku_[b] + 1, nrows, nrows, kl_[b], kl_[b] + ku_[b]);
diagBlocks_[b].putScalar(Teuchos::ScalarTraits<local_scalar_type>::zero());
}
// We assume that if you called this method, you intend to recompute
// everything.
IsInitialized_ = false;
IsComputed_ = false;
std::fill (ipiv_.begin (), ipiv_.end (), 0);
IsInitialized_ = true;
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
compute ()
{
TEUCHOS_TEST_FOR_EXCEPTION(
ipiv_.size () != this->partitions_.size(), std::logic_error,
"Ifpack2::BandedContainer::compute: ipiv_ array has the wrong size. "
"Please report this bug to the Ifpack2 developers.");
IsComputed_ = false;
if (! this->isInitialized ()) {
this->initialize ();
}
// Extract the submatrices from input matrix.
extract ();
factor (); // factor the submatrix
IsComputed_ = true;
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
clearBlocks ()
{
std::vector<HostViewLocal> empty1;
std::swap(empty1, X_local);
std::vector<HostViewLocal> empty2;
std::swap(empty2, Y_local);
Container<MatrixType>::clearBlocks ();
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
factor ()
{
Teuchos::LAPACK<int, local_scalar_type> lapack;
int INFO = 0;
for(int i = 0; i < this->numBlocks_; i++)
{
// Plausibility checks for matrix
TEUCHOS_TEST_FOR_EXCEPTION(diagBlocks_[i].values()==0, std::invalid_argument,
"BandedContainer<T>::factor: Diagonal block is an empty SerialBandDenseMatrix<T>!");
TEUCHOS_TEST_FOR_EXCEPTION(diagBlocks_[i].upperBandwidth() < diagBlocks_[i].lowerBandwidth(), std::invalid_argument,
"BandedContainer<T>::factor: Diagonal block needs kl additional superdiagonals for factorization! However, the number of superdiagonals is smaller than the number of subdiagonals!");
int* blockIpiv = &ipiv_[this->partitionIndices_[i]];
lapack.GBTRF (diagBlocks_[i].numRows(),
diagBlocks_[i].numCols(),
diagBlocks_[i].lowerBandwidth(),
diagBlocks_[i].upperBandwidth() - diagBlocks_[i].lowerBandwidth(), /* enter the real number of superdiagonals (see Teuchos_SerialBandDenseSolver)*/
diagBlocks_[i].values(),
diagBlocks_[i].stride(),
blockIpiv,
&INFO);
// INFO < 0 is a bug.
TEUCHOS_TEST_FOR_EXCEPTION(
INFO < 0, std::logic_error, "Ifpack2::BandedContainer::factor: "
"LAPACK's _GBTRF (LU factorization with partial pivoting) was called "
"incorrectly. INFO = " << INFO << " < 0. "
"Please report this bug to the Ifpack2 developers.");
// INFO > 0 means the matrix is singular. This is probably an issue
// either with the choice of rows the rows we extracted, or with the
// input matrix itself.
TEUCHOS_TEST_FOR_EXCEPTION(
INFO > 0, std::runtime_error, "Ifpack2::BandedContainer::factor: "
"LAPACK's _GBTRF (LU factorization with partial pivoting) reports that the "
"computed U factor is exactly singular. U(" << INFO << "," << INFO << ") "
"(one-based index i) is exactly zero. This probably means that the input "
"matrix has a singular diagonal block.");
}
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
applyImpl (HostViewLocal& X,
HostViewLocal& Y,
int blockIndex,
int stride,
Teuchos::ETransp mode,
const local_scalar_type alpha,
const local_scalar_type beta) const
{
using Teuchos::ArrayRCP;
using Teuchos::Ptr;
using Teuchos::ptr;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::rcpFromRef;
TEUCHOS_TEST_FOR_EXCEPTION(
X.dimension_0 () != Y.dimension_0 (),
std::logic_error, "Ifpack2::BandedContainer::applyImpl: X and Y have "
"incompatible dimensions (" << X.dimension_0 () << " resp. "
<< Y.dimension_0 () << "). Please report this bug to "
"the Ifpack2 developers.");
TEUCHOS_TEST_FOR_EXCEPTION(
X.dimension_0 () != static_cast<size_t> (mode == Teuchos::NO_TRANS ? diagBlocks_[blockIndex].numCols() : diagBlocks_[blockIndex].numRows()),
std::logic_error, "Ifpack2::BandedContainer::applyImpl: The input "
"multivector X has incompatible dimensions from those of the "
"inverse operator (" << X.dimension_0 () << " vs. "
<< (mode == Teuchos::NO_TRANS ? diagBlocks_[blockIndex].numCols() : diagBlocks_[blockIndex].numRows())
<< "). Please report this bug to the Ifpack2 developers.");
TEUCHOS_TEST_FOR_EXCEPTION(
Y.dimension_0 () != static_cast<size_t> (mode == Teuchos::NO_TRANS ? diagBlocks_[blockIndex].numRows() : diagBlocks_[blockIndex].numCols()),
std::logic_error, "Ifpack2::BandedContainer::applyImpl: The output "
"multivector Y has incompatible dimensions from those of the "
"inverse operator (" << Y.dimension_0 () << " vs. "
<< (mode == Teuchos::NO_TRANS ? diagBlocks_[blockIndex].numRows() : diagBlocks_[blockIndex].numCols())
<< "). Please report this bug to the Ifpack2 developers.");
size_t numVecs = (int) X.dimension_1 ();
auto zero = Teuchos::ScalarTraits<scalar_type>::zero ();
if (alpha == zero) { // don't need to solve the linear system
if (beta == zero) {
// Use BLAS AXPY semantics for beta == 0: overwrite, clobbering
// any Inf or NaN values in Y (rather than multiplying them by
// zero, resulting in NaN values).
for(size_t j = 0; j < Y.dimension_0(); j++)
for(size_t i = 0; i < Y.dimension_1(); i++)
Y(i, j) = zero;
}
else { // beta != 0
for(size_t j = 0; j < Y.dimension_0(); j++)
for(size_t i = 0; i < Y.dimension_1(); i++)
Y(i, j) *= beta;
}
}
else { // alpha != 0; must solve the linear system
Teuchos::LAPACK<int, local_scalar_type> lapack;
// If beta is nonzero or Y is not constant stride, we have to use
// a temporary output multivector. It gets a copy of X, since
// GBTRS overwrites its (multi)vector input with its output.
Ptr<HostViewLocal> Y_tmp;
bool deleteYT = false;
if(beta == zero) {
Y = X;
Y_tmp = ptr(&Y);
}
else {
Y_tmp = ptr (new HostViewLocal ("", X.dimension_0 (), X.dimension_1 ())); // constructor copies X
deleteYT = true;
Kokkos::deep_copy(*Y_tmp, X);
}
local_scalar_type* const Y_ptr = (local_scalar_type*) Y_tmp->ptr_on_device();
int INFO = 0;
const char trans =(mode == Teuchos::CONJ_TRANS ? 'C' : (mode == Teuchos::TRANS ? 'T' : 'N'));
const int* blockIpiv = &ipiv_[this->partitionIndices_[blockIndex]];
lapack.GBTRS(trans,
diagBlocks_[blockIndex].numCols(),
diagBlocks_[blockIndex].lowerBandwidth(),
/* enter the real number of superdiagonals (see Teuchos_SerialBandDenseSolver)*/
diagBlocks_[blockIndex].upperBandwidth() - diagBlocks_[blockIndex].lowerBandwidth(),
numVecs,
diagBlocks_[blockIndex].values(),
diagBlocks_[blockIndex].stride(),
blockIpiv,
Y_ptr, stride, &INFO);
TEUCHOS_TEST_FOR_EXCEPTION(
INFO != 0, std::runtime_error, "Ifpack2::BandedContainer::applyImpl: "
"LAPACK's _GBTRS (solve using LU factorization with partial pivoting) "
"failed with INFO = " << INFO << " != 0.");
if (beta != zero) {
for(size_t j = 0; j < Y.dimension_1(); j++)
for(size_t i = 0; i < Y.dimension_0(); i++)
Y(i, j) = beta * Y(i, j) + alpha * (*Y_tmp)(i, j);
}
if(deleteYT)
delete Y_tmp.get();
}
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
apply (HostView& X,
HostView& Y,
int blockIndex,
int stride,
Teuchos::ETransp mode,
scalar_type alpha,
scalar_type beta) const
{
using Teuchos::ArrayView;
using Teuchos::as;
using Teuchos::RCP;
using Teuchos::rcp;
// The local operator might have a different Scalar type than
// MatrixType. This means that we might have to convert X and Y to
// the Tpetra::MultiVector specialization that the local operator
// wants. This class' X_ and Y_ internal fields are of the right
// type for the local operator, so we can use those as targets.
// Tpetra::MultiVector specialization corresponding to MatrixType.
Details::MultiVectorLocalGatherScatter<mv_type, local_mv_type> mvgs;
const size_t numVecs = X.dimension_1();
TEUCHOS_TEST_FOR_EXCEPTION(
! IsComputed_, std::runtime_error, "Ifpack2::BandedContainer::apply: "
"You must have called the compute() method before you may call apply(). "
"You may call the apply() method as many times as you want after calling "
"compute() once, but you must have called compute() at least once.");
TEUCHOS_TEST_FOR_EXCEPTION(
X.dimension_1() != Y.dimension_1(), std::runtime_error,
"Ifpack2::BandedContainer::apply: X and Y have different numbers of "
"vectors. X has " << X.dimension_1()
<< ", but Y has " << Y.dimension_1() << ".");
if (numVecs == 0) {
return; // done! nothing to do
}
// The local operator works on a permuted subset of the local parts
// of X and Y. The subset and permutation are defined by the index
// array returned by getLocalRows(). If the permutation is trivial
// and the subset is exactly equal to the local indices, then we
// could use the local parts of X and Y exactly, without needing to
// permute. Otherwise, we have to use temporary storage to permute
// X and Y. For now, we always use temporary storage.
//
// FIXME (mfh 20 Aug 2013) There might be an implicit assumption
// here that the row Map and the range Map of that operator are
// the same.
//
// FIXME (mfh 20 Aug 2013) This "local permutation" functionality
// really belongs in Tpetra.
if(X_local.size() == 0)
{
//create all X_local and Y_local managed Views at once, are
//reused in subsequent apply() calls
for(int i = 0; i < this->numBlocks_; i++)
{
X_local.emplace_back("", this->blockRows_[i], numVecs);
}
for(int i = 0; i < this->numBlocks_; i++)
{
Y_local.emplace_back("", this->blockRows_[i], numVecs);
}
}
ArrayView<const local_ordinal_type> localRows = this->getLocalRows(blockIndex);
mvgs.gatherViewToView(X_local[blockIndex], X, localRows);
// We must gather the contents of the output multivector Y even on
// input to applyImpl(), since the inverse operator might use it as
// an initial guess for a linear solve. We have no way of knowing
// whether it does or does not.
mvgs.gatherViewToView (Y_local[blockIndex], Y, localRows);
// Apply the local operator:
// Y_local := beta*Y_local + alpha*M^{-1}*X_local
this->applyImpl (X_local[blockIndex], Y_local[blockIndex], blockIndex, stride, mode, as<local_scalar_type>(alpha),
as<local_scalar_type>(beta));
// Scatter the permuted subset output vector Y_local back into the
// original output multivector Y.
mvgs.scatterViewToView(Y, Y_local[blockIndex], localRows);
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
weightedApply (HostView& X,
HostView& Y,
HostView& D,
int blockIndex,
int stride,
Teuchos::ETransp mode,
scalar_type alpha,
scalar_type beta) const
{
using Teuchos::ArrayRCP;
using Teuchos::ArrayView;
using Teuchos::Range1D;
using Teuchos::Ptr;
using Teuchos::ptr;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::rcp_const_cast;
using std::cerr;
using std::endl;
TEUCHOS_TEST_FOR_EXCEPTION(
true, std::runtime_error, "Ifpack2::BandedContainer::"
"weightedApply: This code is not tested and not used. Expect bugs.");
// The local operator template parameter might have a different
// Scalar type than MatrixType. This means that we might have to
// convert X and Y to the Tpetra::MultiVector specialization that
// the local operator wants. This class' X_ and Y_ internal fields
// are of the right type for the local operator, so we can use those
// as targets.
auto zero = Teuchos::ScalarTraits<scalar_type>::zero ();
auto one = Teuchos::ScalarTraits<scalar_type>::one ();
// typedef Tpetra::Vector<local_scalar_type, local_ordinal_type, global_ordinal_type, node_type> LV; // unused
Details::MultiVectorLocalGatherScatter<mv_type, local_mv_type> mvgs;
const size_t numVecs = X.dimension_1();
TEUCHOS_TEST_FOR_EXCEPTION(
! IsComputed_, std::runtime_error, "Ifpack2::BandedContainer::"
"weightedApply: You must have called the compute() method before you may "
"call apply(). You may call the apply() method as many times as you want "
"after calling compute() once, but you must have called compute() at least "
"once.");
TEUCHOS_TEST_FOR_EXCEPTION(
numVecs != Y.dimension_1(), std::runtime_error,
"Ifpack2::BandedContainer::weightedApply: X and Y have different numbers "
"of vectors. X has " << X.dimension_1() << ", but Y has "
<< Y.dimension_1() << ".");
if (numVecs == 0) {
return; // done! nothing to do
}
// The local operator works on a permuted subset of the local parts
// of X and Y. The subset and permutation are defined by the index
// array returned by getLocalRows(). If the permutation is trivial
// and the subset is exactly equal to the local indices, then we
// could use the local parts of X and Y exactly, without needing to
// permute. Otherwise, we have to use temporary storage to permute
// X and Y. For now, we always use temporary storage.
//
// Create temporary permuted versions of the input and output.
// (Re)allocate X_ and/or Y_ only if necessary. We'll use them to
// store the permuted versions of X resp. Y. Note that X_local has
// the domain Map of the operator, which may be a permuted subset of
// the local Map corresponding to X.getMap(). Similarly, Y_local
// has the range Map of the operator, which may be a permuted subset
// of the local Map corresponding to Y.getMap(). numRows_ here
// gives the number of rows in the row Map of the local operator.
//
// FIXME (mfh 20 Aug 2013) There might be an implicit assumption
// here that the row Map and the range Map of that operator are
// the same.
//
// FIXME (mfh 20 Aug 2013) This "local permutation" functionality
// really belongs in Tpetra.
const size_t numRows = this->blockRows_[blockIndex];
if(X_local.size() == 0)
{
//create all X_local and Y_local managed Views at once, are
//reused in subsequent apply() calls
for(int i = 0; i < this->numBlocks_; i++)
{
X_local.emplace_back("", this->blockRows_[i], numVecs);
}
for(int i = 0; i < this->numBlocks_; i++)
{
Y_local.emplace_back("", this->blockRows_[i], numVecs);
}
}
HostViewLocal D_local("", numRows, 1);
HostViewLocal X_scaled("", numRows, numVecs);
ArrayView<const local_ordinal_type> localRows = this->getLocalRows(blockIndex);
mvgs.gatherViewToView (X_local[blockIndex], X, localRows);
// We must gather the output multivector Y even on input to
// applyImpl(), since the local operator might use it as an initial
// guess for a linear solve. We have no way of knowing whether it
// does or does not.
mvgs.gatherViewToView (Y_local[blockIndex], Y, localRows);
// Apply the diagonal scaling D to the input X. It's our choice
// whether the result has the original input Map of X, or the
// permuted subset Map of X_local. If the latter, we also need to
// gather D into the permuted subset Map. We choose the latter, to
// save memory and computation. Thus, we do the following:
//
// 1. Gather D into a temporary vector D_local.
// 2. Create a temporary X_scaled to hold diag(D_local) * X_local.
// 3. Compute X_scaled := diag(D_loca) * X_local.
mvgs.gatherViewToView (D_local, D, localRows);
for(size_t j = 0; j < numVecs; j++)
for(size_t i = 0; i < numRows; i++)
X_scaled(i, j) = X_local[blockIndex](i, j) * D_local(i, 0);
// Y_temp will hold the result of M^{-1}*X_scaled. If beta == 0, we
// can write the result of Inverse_->apply() directly to Y_local, so
// Y_temp may alias Y_local. Otherwise, if beta != 0, we need
// temporary storage for M^{-1}*X_scaled, so Y_temp must be
// different than Y_local.
Ptr<HostViewLocal> Y_temp;
bool deleteYT = false;
if(beta == zero)
Y_temp = ptr(&Y_local[blockIndex]);
else
{
Y_temp = ptr(new HostViewLocal("", numRows, numVecs));
deleteYT = true;
}
// Apply the local operator: Y_temp := M^{-1} * X_scaled
applyImpl(X_scaled, *Y_temp, blockIndex, stride, mode, one, one);
// Y_local := beta * Y_local + alpha * diag(D_local) * Y_temp.
//
// Note that we still use the permuted subset scaling D_local here,
// because Y_temp has the same permuted subset Map. That's good, in
// fact, because it's a subset: less data to read and multiply.
for(size_t j = 0; j < numVecs; j++)
for(size_t i = 0; i < numRows; i++)
Y_local[blockIndex](i, j) = Y_local[blockIndex](i, j) * (local_impl_scalar_type) beta + (local_impl_scalar_type) alpha * (*Y_temp)(i, j) * D_local(i, 0);
if(deleteYT)
delete Y_temp.get();
// Copy the permuted subset output vector Y_local into the original
// output multivector Y.
mvgs.scatterViewToView (Y, Y_local[blockIndex], localRows);
}
template<class MatrixType, class LocalScalarType>
std::ostream&
BandedContainer<MatrixType, LocalScalarType, true>::
print (std::ostream& os) const
{
Teuchos::FancyOStream fos (Teuchos::rcpFromRef (os));
fos.setOutputToRootOnly (0);
describe (fos);
return os;
}
template<class MatrixType, class LocalScalarType>
std::string
BandedContainer<MatrixType, LocalScalarType, true>::
description () const
{
std::ostringstream oss;
oss << Teuchos::Describable::description();
if (isInitialized()) {
if (isComputed()) {
oss << "{status = initialized, computed";
}
else {
oss << "{status = initialized, not computed";
}
}
else {
oss << "{status = not initialized, not computed";
}
oss << "}";
return oss.str();
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
describe (Teuchos::FancyOStream& os,
const Teuchos::EVerbosityLevel verbLevel) const
{
if(verbLevel==Teuchos::VERB_NONE) return;
os << "================================================================================" << std::endl;
os << "Ifpack2::BandedContainer" << std::endl;
for(int i = 0; i < this->numBlocks_; i++)
{
os << "Block " << i << ": Number of rows = " << this->blockRows_[i] << std::endl;
os << "Block " << i << ": Number of subdiagonals = " << diagBlocks_[i].lowerBandwidth() << std::endl;
os << "Block " << i << ": Number of superdiagonals = " << diagBlocks_[i].upperBandwidth() << std::endl;
}
os << "isInitialized() = " << IsInitialized_ << std::endl;
os << "isComputed() = " << IsComputed_ << std::endl;
os << "================================================================================" << std::endl;
os << std::endl;
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, true>::
extract ()
{
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::toString;
auto& A = *this->inputMatrix_;
const size_t inputMatrixNumRows = A.getNodeNumRows ();
// We only use the rank of the calling process and the number of MPI
// processes for generating error messages. Extraction itself is
// entirely local to each participating MPI process.
const int myRank = A.getRowMap()->getComm()->getRank();
const int numProcs = A.getRowMap()->getComm()->getSize();
for(int blockIndex = 0; blockIndex < this->numBlocks_; blockIndex++)
{
const local_ordinal_type numRows_ = this->blockRows_[blockIndex];
// Sanity check that the local row indices to extract fall within
// the valid range of local row indices for the input matrix.
ArrayView<const local_ordinal_type> localRows = this->getLocalRows(blockIndex);
for(local_ordinal_type j = 0; j < numRows_; j++)
{
TEUCHOS_TEST_FOR_EXCEPTION(
localRows[j] < 0 ||
static_cast<size_t> (localRows[j]) >= inputMatrixNumRows,
std::runtime_error, "Ifpack2::BandedContainer::extract: On process " <<
myRank << " of " << numProcs << ", localRows[j=" << j << "] = " <<
localRows[j] << ", which is out of the valid range of local row indices "
"indices [0, " << (inputMatrixNumRows - 1) << "] for the input matrix.");
}
// Convert the local row indices we want into local column indices.
// For every local row ii_local = localRows[i] we take, we also want
// to take the corresponding column. To find the corresponding
// column, we use the row Map to convert the local row index
// ii_local into a global index ii_global, and then use the column
// Map to convert ii_global into a local column index jj_local. If
// the input matrix doesn't have a column Map, we need to be using
// global indices anyway...
// We use the domain Map to exclude off-process global entries.
const map_type& globalRowMap = *(A.getRowMap ());
const map_type& globalColMap = *(A.getColMap ());
const map_type& globalDomMap = *(A.getDomainMap ());
bool rowIndsValid = true;
bool colIndsValid = true;
Array<local_ordinal_type> localCols (numRows_);
// For error messages, collect the sets of invalid row indices and
// invalid column indices. They are otherwise not useful.
Array<local_ordinal_type> invalidLocalRowInds;
Array<global_ordinal_type> invalidGlobalColInds;
for(local_ordinal_type i = 0; i < numRows_; i++)
{
// ii_local is the (local) row index we want to look up.
const local_ordinal_type ii_local = localRows[i];
// Find the global index jj_global corresponding to ii_local.
// Global indices are the same (rather, are required to be the
// same) in all three Maps, which is why we use jj (suggesting a
// column index, which is how we will use it below).
const global_ordinal_type jj_global = globalRowMap.getGlobalElement(ii_local);
if(jj_global == Teuchos::OrdinalTraits<global_ordinal_type>::invalid())
{
// If ii_local is not a local index in the row Map on the
// calling process, that means localRows is incorrect. We've
// already checked for this in the constructor, but we might as
// well check again here, since it's cheap to do so (just an
// integer comparison, since we need jj_global anyway).
rowIndsValid = false;
invalidLocalRowInds.push_back(ii_local);
break;
}
// Exclude "off-process" entries: that is, those in the column Map
// on this process that are not in the domain Map on this process.
if(globalDomMap.isNodeGlobalElement(jj_global))
{
// jj_global is not an off-process entry. Look up its local
// index in the column Map; we want to extract this column index
// from the input matrix. If jj_global is _not_ in the column
// Map on the calling process, that could mean that the column
// in question is empty on this process. That would be bad for
// solving linear systems with the extract submatrix. We could
// solve the resulting singular linear systems in a minimum-norm
// least-squares sense, but for now we simply raise an exception.
const local_ordinal_type jj_local = globalColMap.getLocalElement(jj_global);
if(jj_local == Teuchos::OrdinalTraits<local_ordinal_type>::invalid())
{
colIndsValid = false;
invalidGlobalColInds.push_back(jj_global);
break;
}
localCols[i] = jj_local;
}
}
TEUCHOS_TEST_FOR_EXCEPTION(
! rowIndsValid, std::logic_error, "Ifpack2::BandedContainer::extract: "
"On process " << myRank << ", at least one row index in the set of local "
"row indices given to the constructor is not a valid local row index in "
"the input matrix's row Map on this process. This should be impossible "
"because the constructor checks for this case. Here is the complete set "
"of invalid local row indices: " << toString(invalidLocalRowInds) << ". "
"Please report this bug to the Ifpack2 developers.");
TEUCHOS_TEST_FOR_EXCEPTION(
! colIndsValid, std::runtime_error, "Ifpack2::BandedContainer::extract: "
"On process " << myRank << ", "
"At least one row index in the set of row indices given to the constructor "
"does not have a corresponding column index in the input matrix's column "
"Map. This probably means that the column(s) in question is/are empty on "
"this process, which would make the submatrix to extract structurally "
"singular. Here is the compete set of invalid global column indices: "
<< toString(invalidGlobalColInds) << ".");
const size_t maxNumEntriesInRow = A.getNodeMaxNumRowEntries();
Array<scalar_type> val(maxNumEntriesInRow);
Array<local_ordinal_type> ind(maxNumEntriesInRow);
const local_ordinal_type INVALID = Teuchos::OrdinalTraits<local_ordinal_type>::invalid();
for (local_ordinal_type i = 0; i < numRows_; i++)
{
const local_ordinal_type localRow = this->partitions_[this->partitionIndices_[blockIndex] + i];
size_t numEntries;
A.getLocalRowCopy(localRow, ind(), val(), numEntries);
for (size_t k = 0; k < numEntries; ++k)
{
const local_ordinal_type localCol = ind[k];
// Skip off-process elements
//
// FIXME (mfh 24 Aug 2013) This assumes the following:
//
// 1. The column and row Maps begin with the same set of
// on-process entries, in the same order. That is,
// on-process row and column indices are the same.
// 2. All off-process indices in the column Map of the input
// matrix occur after that initial set.
if(localCol >= 0 && static_cast<size_t>(localCol) < inputMatrixNumRows)
{
// for local column IDs, look for each ID in the list
// of columns hosted by this object
local_ordinal_type jj = INVALID;
for (size_t kk = 0; kk < (size_t) numRows_; kk++)
{
if(localRows[kk] == localCol)
jj = kk;
}
if (jj != INVALID)
diagBlocks_[blockIndex](i, jj) += val[k]; // ???
}
}
}
}
}
template<class MatrixType, class LocalScalarType>
std::string BandedContainer<MatrixType, LocalScalarType, true>::getName()
{
return "Banded";
}
template<class MatrixType, class LocalScalarType>
BandedContainer<MatrixType, LocalScalarType, false>::
BandedContainer (const Teuchos::RCP<const row_matrix_type>& matrix,
const Teuchos::Array<Teuchos::Array<local_ordinal_type> >& partitions,
const Teuchos::RCP<const import_type>& importer,
int OverlapLevel,
scalar_type DampingFactor) :
Container<MatrixType>(matrix, partitions, importer, OverlapLevel, DampingFactor)
{
TEUCHOS_TEST_FOR_EXCEPTION
(true, std::logic_error, "Ifpack2::BandedContainer: Not implemented for "
"LocalScalarType = " << Teuchos::TypeNameTraits<LocalScalarType>::name ()
<< ".");
}
template<class MatrixType, class LocalScalarType>
BandedContainer<MatrixType, LocalScalarType, false>::
BandedContainer (const Teuchos::RCP<const row_matrix_type>& matrix,
const Teuchos::Array<local_ordinal_type>& localRows) :
Container<MatrixType>(matrix, localRows)
{
TEUCHOS_TEST_FOR_EXCEPTION
(true, std::logic_error, "Ifpack2::BandedContainer: Not implemented for "
"LocalScalarType = " << Teuchos::TypeNameTraits<LocalScalarType>::name ()
<< ".");
}
template<class MatrixType, class LocalScalarType>
BandedContainer<MatrixType, LocalScalarType, false>::
~BandedContainer () {}
template<class MatrixType, class LocalScalarType>
void BandedContainer<MatrixType, LocalScalarType, false>::
setParameters (const Teuchos::ParameterList& List) {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
initialize () {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
compute () {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
clearBlocks () {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
factor () {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
applyImpl (HostViewLocal& X,
HostViewLocal& Y,
int blockIndex,
int stride,
Teuchos::ETransp mode,
const local_scalar_type alpha,
const local_scalar_type beta) const {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
apply (HostView& X,
HostView& Y,
int blockIndex,
int stride,
Teuchos::ETransp mode,
scalar_type alpha,
scalar_type beta) const {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
weightedApply (HostView& X,
HostView& Y,
HostView& D,
int blockIndex,
int stride,
Teuchos::ETransp mode,
scalar_type alpha,
scalar_type beta) const {}
template<class MatrixType, class LocalScalarType>
std::ostream&
BandedContainer<MatrixType, LocalScalarType, false>::
print (std::ostream& os) const
{
return os;
}
template<class MatrixType, class LocalScalarType>
std::string
BandedContainer<MatrixType, LocalScalarType, false>::
description () const
{
return "";
}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
describe (Teuchos::FancyOStream& os,
const Teuchos::EVerbosityLevel verbLevel) const {}
template<class MatrixType, class LocalScalarType>
void
BandedContainer<MatrixType, LocalScalarType, false>::
extract () {}
template<class MatrixType, class LocalScalarType>
std::string BandedContainer<MatrixType, LocalScalarType, false>::getName()
{
return "";
}
} // namespace Ifpack2
#define IFPACK2_BANDEDCONTAINER_INSTANT(S,LO,GO,N) \
template class Ifpack2::BandedContainer< Tpetra::RowMatrix<S, LO, GO, N>, S >;
#endif // IFPACK2_BANDEDCONTAINER_HPP
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