This file is indexed.

/usr/include/trilinos/Ifpack2_OverlapGraph.hpp is in libtrilinos-ifpack2-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
/*@HEADER
// ***********************************************************************
//
//       Ifpack2: Tempated Object-Oriented Algebraic Preconditioner Package
//                 Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/

#ifndef IFPACK2_OVERLAPGRAPH_HPP
#define IFPACK2_OVERLAPGRAPH_HPP

#include "Ifpack2_ConfigDefs.hpp"
#include "Tpetra_CrsGraph.hpp"
#include "Tpetra_Import.hpp"
#include "Teuchos_RCP.hpp"
#include "Ifpack2_CreateOverlapGraph.hpp"

namespace Teuchos {
  class ParameterList;
}

namespace Ifpack2 {

/// \class OverlapGraph
/// \brief Construct an overlapped graph from a given nonoverlapping graph.
///
/// FIXME (mfh 26 Sep 2013) It would be more appropriate for this
/// class to have a single template parameter, namely a specialization
/// of Tpetra::CrsGraph or Tpetra::RowGraph.  That would avoid issues
/// with the optional fourth template parameter of Tpetra::CrsGraph.
///
/// FIXME (mfh 26 Sep 2013) I seem to have found this class in a
/// half-implemented state.  I did not add this class and I make no
/// promises that it works.  I heartily encourage developers to make
/// use of the Ifpack2::Details namespace for classes that they are
/// not yet ready to make public.

template<class LocalOrdinal = typename Tpetra::CrsGraph<>::local_ordinal_type,
         class GlobalOrdinal = typename Tpetra::CrsGraph<LocalOrdinal>::global_ordinal_type,
         class Node = typename Tpetra::CrsGraph<LocalOrdinal, GlobalOrdinal>::node_type>
class OverlapGraph : public Teuchos::Describable {
public:
  //! The Tpetra::CrsGraph specialization that this class uses.
  typedef Tpetra::CrsGraph<LocalOrdinal, GlobalOrdinal, Node> graph_type;

  /// \brief Constructor that takes a graph and the level of overlap.
  ///
  /// \param UserMatrixGraph_in [in] The input graph.  We assume that
  ///   its row Map is nonoverlapping.
  ///
  /// \param OverlapLevel_in [in] The level of overlap; zero means none.
  OverlapGraph (const Teuchos::RCP<const graph_type>& UserMatrixGraph_in,
                int OverlapLevel_in);

  //! Copy constructor.
  OverlapGraph (const OverlapGraph<LocalOrdinal,GlobalOrdinal,Node>& Source);

  //! Destructor (virtual for memory safety of derived classes).
  virtual ~OverlapGraph () {}

  //! Return the overlap graph.
  const Tpetra::CrsGraph<LocalOrdinal,GlobalOrdinal,Node>&
  getOverlapGraph () const { return *OverlapGraph_; }

  //! Return the overlap graph's row Map.
  const Tpetra::Map<LocalOrdinal,GlobalOrdinal,Node>&
  getOverlapRowMap () const {return *OverlapRowMap_; }

  //! Return the Import object.
  const Tpetra::Import<LocalOrdinal,GlobalOrdinal,Node>&
  getOverlapImporter () const { return *OverlapImporter_; }

  /// \brief Return the level of overlap used to create this graph.
  ///
  /// The graph created by this class uses a recursive definition of
  /// overlap.  Level one overlap is created by copying all
  /// off-process rows that are reached to be at least one column of
  /// the rows that are on processor.  Level two overlap is the same
  /// process used on the level one graph, and so on.
  int OverlapLevel () const { return OverlapLevel_; }
  //@}

protected:
  Teuchos::RCP<const Tpetra::CrsGraph<LocalOrdinal,GlobalOrdinal,Node> > OverlapGraph_;
  Teuchos::RCP<const Tpetra::CrsGraph<LocalOrdinal,GlobalOrdinal,Node> > UserMatrixGraph_;
  Teuchos::RCP<Tpetra::Map<LocalOrdinal,GlobalOrdinal,Node> > OverlapRowMap_;
  Teuchos::RCP<Tpetra::Import<LocalOrdinal,GlobalOrdinal,Node> > OverlapImporter_;
  int OverlapLevel_;
  bool IsOverlapped_;
};

template<class LocalOrdinal, class GlobalOrdinal, class Node>
OverlapGraph<LocalOrdinal,GlobalOrdinal,Node>::
OverlapGraph (const Teuchos::RCP<const Tpetra::CrsGraph<LocalOrdinal,GlobalOrdinal,Node> >& UserMatrixGraph_in,
              int OverlapLevel_in)
  : UserMatrixGraph_ (UserMatrixGraph_in),
    OverlapLevel_ (OverlapLevel_in),
    IsOverlapped_ (OverlapLevel_in > 0 && UserMatrixGraph_in->getDomainMap ()->isDistributed ())
{
  OverlapGraph_ = createOverlapGraph (UserMatrixGraph_, OverlapLevel_);
}

template<class LocalOrdinal, class GlobalOrdinal, class Node>
OverlapGraph<LocalOrdinal,GlobalOrdinal,Node>::
OverlapGraph (const OverlapGraph<LocalOrdinal,GlobalOrdinal,Node>& Source)
  : UserMatrixGraph_ (Source.UserMatrixGraph_),
    OverlapRowMap_ (Source.OverlapRowMap_),
    OverlapLevel_ (Source.OverlapLevel_),
    IsOverlapped_ (Source.IsOverlapped_)
{
  using Teuchos::rcp;
  typedef Tpetra::Map<LocalOrdinal,GlobalOrdinal,Node> map_type;

  if (IsOverlapped_) {
    if (! OverlapGraph_.is_null ()) {
      OverlapGraph_ = rcp (new graph_type (*OverlapGraph_));
    }
    if (! OverlapRowMap_.is_null ()) {
      OverlapRowMap_ = rcp (new map_type (*OverlapRowMap_));
    }
  }
}

}//namespace Ifpack2

#endif // IFPACK2_OVERLAPGRAPH_HPP