This file is indexed.

/usr/include/trilinos/Ifpack2_Preconditioner.hpp is in libtrilinos-ifpack2-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
/*@HEADER
// ***********************************************************************
//
//       Ifpack2: Tempated Object-Oriented Algebraic Preconditioner Package
//                 Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/

/// @file Ifpack2_Preconditioner.hpp

#ifndef IFPACK2_PRECONDITIONER_HPP
#define IFPACK2_PRECONDITIONER_HPP

#include "Ifpack2_ConfigDefs.hpp"
#include "Tpetra_Operator.hpp"
#include "Tpetra_RowMatrix.hpp"
#include "Teuchos_ParameterList.hpp"
#include "Teuchos_ScalarTraits.hpp"
#include <iostream>

namespace Ifpack2 {

/// \class Preconditioner
/// \brief Interface for all Ifpack2 preconditioners
/// \tparam Scalar Type of the matrix's entries; same as the first
///   template parameter of Tpetra::RowMatrix
/// \tparam LocalOrdinal Type of the matrix's local indices; same as the
///   second template parameter of Tpetra::RowMatrix
/// \tparam GlobalOrdinal Type of the matrix's global indices; same as the
///   third template parameter of Tpetra::RowMatrix
/// \tparam Node The matrix's Node type; same as the fourth template
///   parameter of Tpetra::RowMatrix
///
/// The Preconditioner class defines the interface that all Ifpack2
/// preconditioners must implement.  Preconditioner inherits from
/// Tpetra::Operator.  Its apply() method applies the preconditioner.
///
/// If you are familiar with the IFPACK package, please be aware that
/// this is different from IFPACK.  In IFPACK, the ApplyInverse()
/// method applies or "solves with" the preconditioner \f$M^{-1}\f$,
/// and the Apply() method "applies" the preconditioner \f$M\f$.  In
/// Ifpack2, the apply() method applies or "solves with" the
/// preconditioner \f$M^{-1}\f$.  Ifpack2 has no method comparable to
/// IFPACK's Apply().
///
/// Preconditioner provides the following methods
///   - initialize() performs all operations based on the graph of the
///     matrix (without considering the numerical values)
///   - isInitialized() returns true if the preconditioner has been
///     successfully initialized
///   - compute() computes everything required to apply the
///     preconditioner, using the matrix's values (and assuming that the
///     graph structure of the matrix has not changed)
///   - isComputed() returns true if the preconditioner has been
///     successfully computed, false otherwise.
///   - getMatrix() returns a reference to the matrix to be preconditioned
///
/// Implementations of compute() must internally call initialize() if
/// isInitialized() returns false. The preconditioner is applied by
/// apply() (which returns if isComputed() is false). Every time that
/// initialize() is called, the object destroys all the previously
/// allocated information, and reinitializes the preconditioner. Every
/// time compute() is called, the object recomputes the actual values of
/// the preconditioner.
template<class Scalar =
           Tpetra::Operator<>::scalar_type,
         class LocalOrdinal =
           typename Tpetra::Operator<Scalar>::local_ordinal_type,
         class GlobalOrdinal =
           typename Tpetra::Operator<Scalar, LocalOrdinal>::global_ordinal_type,
         class Node =
           typename Tpetra::Operator<Scalar, LocalOrdinal, GlobalOrdinal>::node_type>
class Preconditioner :
  virtual public Tpetra::Operator<Scalar, LocalOrdinal, GlobalOrdinal, Node> {
public:
  //! The type of the magnitude (absolute value) of a matrix entry.
  typedef typename Teuchos::ScalarTraits<Scalar>::magnitudeType magnitude_type;

  //! Destructor.
  virtual ~Preconditioner(){}

  /// @name Methods implementing Tpetra::Operator.
  //@{

  /// @brief The domain Map of this operator.
  ///
  /// The domain Map describes the distribution of valid input vectors
  /// X to the apply() method.
  virtual Teuchos::RCP<const Tpetra::Map<LocalOrdinal,GlobalOrdinal,Node> >
  getDomainMap () const = 0;

  /// @brief The range Map of this operator.
  ///
  /// The range Map describes the distribution of valid output vectors
  /// Y to the apply() method.
  virtual Teuchos::RCP<const Tpetra::Map<LocalOrdinal,GlobalOrdinal,Node> >
  getRangeMap () const = 0;

  /// @brief Apply the preconditioner to X, putting the result in Y.
  ///
  /// If the result of applying this preconditioner to a vector X is
  /// \f$F \cdot X$\f$, then this method computes \f$\beta Y + \alpha F \cdot X\f$.
  /// The typical case is \f$\beta = 0\f$ and \f$\alpha = 1\f$.
  virtual void
  apply (const Tpetra::MultiVector<Scalar,LocalOrdinal,GlobalOrdinal,Node> &X,
         Tpetra::MultiVector<Scalar,LocalOrdinal,GlobalOrdinal,Node> &Y,
         Teuchos::ETransp mode = Teuchos::NO_TRANS,
         Scalar alpha = Teuchos::ScalarTraits<Scalar>::one(),
         Scalar beta = Teuchos::ScalarTraits<Scalar>::zero()) const = 0;
  //@}

  //! Set this preconditioner's parameters.
  virtual void setParameters (const Teuchos::ParameterList& List) = 0;

  /// @brief Set up the graph structure of this preconditioner.
  ///
  /// If the graph structure of the constructor's input matrix has
  /// changed, or if you have not yet called initialize(), you must
  /// call initialize() before you may call compute() or apply().
  ///
  /// Thus, initialize() corresponds to the "symbolic factorization"
  /// step of a sparse factorization, whether or not the specific
  /// preconditioner actually does a sparse factorization.
  virtual void initialize() = 0;

  //! True if the preconditioner has been successfully initialized, else false.
  virtual bool isInitialized() const = 0;

  /// @brief Set up the numerical values in this preconditioner.
  ///
  /// If the values of the constructor's input matrix have changed, or
  /// if you have not yet called compute(), you must call compute()
  /// before you may call apply().
  ///
  /// Thus, compute() corresponds to the "numeric factorization"
  /// step of a sparse factorization, whether or not the specific
  /// preconditioner actually does a sparse factorization.
  virtual void compute() = 0;

  //! True if the preconditioner has been successfully computed, else false.
  virtual bool isComputed() const = 0;

  //! The input matrix given to the constructor.
  virtual Teuchos::RCP<const Tpetra::RowMatrix<Scalar,LocalOrdinal,GlobalOrdinal,Node> > getMatrix() const = 0;

  //! The number of calls to initialize().
  virtual int getNumInitialize() const = 0;

  //! The number of calls to compute().
  virtual int getNumCompute() const = 0;

  //! The number of calls to apply().
  virtual int getNumApply() const = 0;

  //! The time (in seconds) spent in initialize().
  virtual double getInitializeTime() const = 0;

  //! The time (in seconds) spent in compute().
  virtual double getComputeTime() const = 0;

  //! The time (in seconds) spent in apply().
  virtual double getApplyTime() const = 0;
};

}//namespace Ifpack2

#endif // IFPACK2_PRECONDITIONER_HPP