This file is indexed.

/usr/include/trilinos/MueLu_Monitor.hpp is in libtrilinos-muelu-dev 12.12.1-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_MONITOR_HPP
#define MUELU_MONITOR_HPP

#include <string>
#include <algorithm>                    // for swap
#include <ostream>                      // for basic_ostream, operator<<, etc
#include "Teuchos_FancyOStream.hpp"     // for OSTab, FancyOStream
#include "Teuchos_RCPDecl.hpp"          // for RCP
#include "Teuchos_RCP.hpp"              // for RCP::RCP<T>, RCP::operator=, etc
#include "Teuchos_Utils.hpp"            // for Utils
#include "MueLu_VerbosityLevel.hpp"     // for MsgType, MsgType::Runtime0, etc
#include "MueLu_BaseClass.hpp"
#include "MueLu_FactoryBase_fwd.hpp"
#include "MueLu_Level.hpp"
#include "MueLu_TimeMonitor.hpp"

namespace MueLu {

  /*! @class PrintMonitor
    Manages indentation of output using Teuchos::OSTab and verbosity level
  */
  class PrintMonitor : public BaseClass {

  public:

    //! Constructor
    PrintMonitor(const BaseClass& object, const std::string& msg, MsgType msgLevel = Runtime0) : object_(object) {
      tabbed = false;
      if (object_.IsPrint(msgLevel)) {
        // Print description and new indent
        object_.GetOStream(msgLevel, 0) << msg << std::endl;
        object_.getOStream()->pushTab();
        tabbed = true;
      }
    }

    ~PrintMonitor() { if (tabbed) object_.getOStream()->popTab(); }

  private:
    PrintMonitor();

    bool tabbed;
    const BaseClass& object_;
  };

  /*! @class Monitor
     @brief Timer to be used in non-factories.

     A timer is created only if 'timerLevel' (Timings0 by default) is enabled.
     This class manages verbosity, as well as times this object and all its children over all levels.

     The timer yields output such as
      \verbatim
       MueLu: SaPFactory: Prolongator smoothing (total)             6.508 (6)        6.551 (6)        6.557 (6)        1.092 (6)
      \endverbatim
     Note that the keyword \a total denotes timing of the object and its children.

     @ingroup MueLuTimerClasses
  */
  class Monitor: public BaseClass {
  public:
    /*! @brief Constructor.

        @param[in] object      Reference to the class instance that is creating this Monitor.
        @param[in] msg         String that indicates what the Monitor is monitoring, e.g., "Build"
        @param[in] msgLevel    Governs whether information should be printed.
        @param[in] timerLevel  Governs whether timing information should be *gathered*.  Setting this to NoTimeReport prevents the creation of timers.
    */
    Monitor(const BaseClass& object, const std::string & msg, MsgType msgLevel = Runtime0, MsgType timerLevel = Timings0)
      : printMonitor_(object, msg + " (" + object.description() + ")", msgLevel),
        timerMonitor_(object, object.ShortClassName() + ": " + msg + " (total)",    timerLevel)
    { }
    
  private:
    //! Manages printing.
    PrintMonitor printMonitor_;
    //! Records total time spent  in this object and all its children, over all levels.
    TimeMonitor timerMonitor_;
  };

  //---------------------------------------------------------------------------------------------------

  /*! @class SubMonitor
    @brief Timer to be used in non-factories.  Similar to Monitor, but doesn't print object description.

    Should be used in non-factory setting.
    Times object and all its children over all levels.
    A timer is created only if 'timerLevel' (Timings1 by default) is enabled.

    The timer yields output such as
     \verbatim
     MueLu: SaPFactory: Eigenvalue estimate (sub, total)        0.149 (6)        0.1615 (6)       0.1643 (6)       0.02692 (6)
     \endverbatim
     Note that the keyword \a sub denotes that this is output from a SubFactoryMonitor.
     Note that the keyword \a total denotes timing of the object and its children.

     @ingroup MueLuTimerClasses
  */
  class SubMonitor: public BaseClass {
  public:
    /*! @brief Constructor.

        @param[in] object      Reference to the class instance that is creating this SubMonitor.
        @param[in] msg         String that indicates what the SubMonitor is monitoring, e.g., "Build"
        @param[in] msgLevel    Governs whether information should be printed.
        @param[in] timerLevel  Governs whether timing information should be *gathered*.  Setting this to NoTimeReport prevents the creation of timers.
    */
    SubMonitor(const BaseClass& object, const std::string & msg, MsgType msgLevel = Runtime1, MsgType timerLevel = Timings1)
      : printMonitor_(object, msg, msgLevel),
        timerMonitor_(object, object.ShortClassName() + ": " + msg + " (sub, total)", timerLevel)
    { }

  private:
    PrintMonitor printMonitor_;
    TimeMonitor timerMonitor_;
  };

//convert integer timer number to string
#ifdef HAVE_MUELU_PROFILING
#define MUELU_TIMER_AS_STRING static_cast<std::ostringstream*>( &(std::ostringstream() << " " << timerIdentifier_++) )->str()
#else
#define MUELU_TIMER_AS_STRING
#endif

  //---------------------------------------------------------------------------------------------------

  /*! @class FactoryMonitor
      @brief Timer to be used in factories.  Similar to Monitor but with additional timers.

     This class provides the following three timers for an object:
     - Timer for this object over all levels, excluding calls to children.
     - Timer for this object per level, excluding calls to children.
     - Timer for this object over all levels, including calls to children.

     The three timers above yield output like the following:
     \verbatim
       MueLu: SaPFactory: Prolongator smoothing                     2.599 (6)        2.602 (6)        2.607 (6)        0.4336 (6)
       MueLu: SaPFactory: Prolongator smoothing (level=5)           0.4731 (1)       0.4735 (1)       0.4736 (1)       0.4735 (1)
       MueLu: SaPFactory: Prolongator smoothing (total)             6.508 (6)        6.551 (6)        6.557 (6)        1.092 (6)
     \endverbatim

     Note that the keyword \a total denotes timing of the object and its children.

     @ingroup MueLuTimerClasses
  */
  class FactoryMonitor: public Monitor {
  public:

    static int timerIdentifier_;

    /*! @brief Constructor

        @param[in] object      Reference to the class instance that is creating this SubMonitor.
        @param[in] msg         String that indicates what the SubMonitor is monitoring, e.g., "Build"
        @param[in] levelID     The MueLu Level number.
        @param[in] msgLevel    Governs whether information should be printed.
        @param[in] timerLevel  Governs whether timing information should be *gathered*.  Setting this to NoTimeReport prevents the creation of timers.
    */
    FactoryMonitor(const BaseClass& object, const std::string & msg, int levelID, MsgType msgLevel = static_cast<MsgType>(Test | Runtime0), MsgType timerLevel = Timings0)
      : Monitor(object, msg, msgLevel, timerLevel),
        timerMonitorExclusive_(object, object.ShortClassName() + ": " + msg, timerLevel)
    {
      if (object.IsPrint(TimingsByLevel)) {
        levelTimeMonitor_ = rcp(new TimeMonitor(object, object.ShortClassName() + ": " + msg +
            " (total, level=" + Teuchos::Utils::toString(levelID) + ")", timerLevel));
        levelTimeMonitorExclusive_ = rcp(new MutuallyExclusiveTimeMonitor<Level>(object, object.ShortClassName() +
            MUELU_TIMER_AS_STRING + ": " + msg + " (level=" + Teuchos::Utils::toString(levelID) + ")", timerLevel));
      }
    }

    /*! @brief Constructor

        @param[in] object      Reference to the class instance that is creating this SubMonitor.
        @param[in] msg         String that indicates what the SubMonitor is monitoring, e.g., "Build".
        @param[in] level       The MueLu Level object.
        @param[in] msgLevel    Governs whether information should be printed.
        @param[in] timerLevel  Governs whether timing information should be *gathered*.  Setting this to NoTimeReport prevents the creation of timers.

      TODO: code factorization
    */
    FactoryMonitor(const BaseClass& object, const std::string & msg, const Level & level, MsgType msgLevel = static_cast<MsgType>(Test | Runtime0), MsgType timerLevel = Timings0)
      : Monitor(object, msg, msgLevel, timerLevel),
      timerMonitorExclusive_(object, object.ShortClassName() + ": " + msg, timerLevel)
    {
      if (object.IsPrint(TimingsByLevel)) {
        levelTimeMonitor_ = rcp(new TimeMonitor(object, object.ShortClassName() + ": " +  msg +
            " (total, level=" + Teuchos::Utils::toString(level.GetLevelID()) + ")", timerLevel));
        levelTimeMonitorExclusive_ = rcp(new MutuallyExclusiveTimeMonitor<Level>(object, object.ShortClassName() +
            MUELU_TIMER_AS_STRING + ": " + msg + " (level=" + Teuchos::Utils::toString(level.GetLevelID()) + ")", timerLevel));
      }
    }

  private:
    //! Total time spent on this level in this object and all its children.
    RCP<TimeMonitor>                           levelTimeMonitor_;
    //! Total time spent on all levels in this object only, excluding all children.
    MutuallyExclusiveTimeMonitor<FactoryBase>  timerMonitorExclusive_;
    //! Total time spent on this level in this object only, excluding all children.
    RCP<MutuallyExclusiveTimeMonitor<Level> >  levelTimeMonitorExclusive_;
  };

  //---------------------------------------------------------------------------------------------------

  /*! @class SubFactoryMonitor
    @brief Timer to be used in factories.  Similar to SubMonitor but adds a timer level by level.

    Times an object and all its children on a level-by-level basis.

    This timer is useful for timing just a part of a factory; the keyword \a sub denotes that this is output from a SubFactoryMonitor.
    The timer yields output such as
     \verbatim
       MueLu: SaPFactory: Eigenvalue estimate (sub, total, level=4)    0.01999 (1)      0.02103 (1)      0.02121 (1)      0.02103 (1)
     \endverbatim
     Note that the keyword \a total denotes timing of the object and its children.

     @ingroup MueLuTimerClasses
  */
  class SubFactoryMonitor: public SubMonitor {
  public:

    /*! @brief Constructor

        @param[in] object      Reference to the class instance that is creating this SubMonitor.
        @param[in] msg         String that indicates what the SubMonitor is monitoring, e.g., "Build"
        @param[in] levelID     The Level number.
        @param[in] msgLevel    Governs whether information should be printed.
        @param[in] timerLevel  Governs whether timing information should be *gathered*.  Setting this to NoTimeReport prevents the creation of timers.
    */
    SubFactoryMonitor(const BaseClass& object, const std::string & msg, int levelID, MsgType msgLevel = Runtime1, MsgType timerLevel = Timings1)
      : SubMonitor(object, msg, msgLevel, timerLevel)
    {
      if (object.IsPrint(TimingsByLevel))
        levelTimeMonitor_ = rcp(new TimeMonitor(object, object.ShortClassName() + ": " + msg +
                                                " (sub, total, level=" + Teuchos::Utils::toString(levelID) + ")", timerLevel));
    }

    /*! @brief Constructor

        @param[in] object      Reference to the class instance that is creating this SubMonitor.
        @param[in] msg         String that indicates what the SubMonitor is monitoring, e.g., "Build"
        @param[in] level       The MueLu Level object.
        @param[in] msgLevel    Governs whether information should be printed.
        @param[in] timerLevel  Governs whether timing information should be *gathered*.  Setting this to NoTimeReport prevents the creation of timers.
    */
    SubFactoryMonitor(const BaseClass& object, const std::string & msg, const Level & level, MsgType msgLevel = Runtime1, MsgType timerLevel = Timings1)
      : SubMonitor(object, msg, msgLevel, timerLevel)
    {
      if (object.IsPrint(TimingsByLevel))
        levelTimeMonitor_ = rcp(new TimeMonitor(object, object.ShortClassName() + ": " +  msg +
                                                " (sub, total, level=" + Teuchos::Utils::toString(level.GetLevelID()) + ")", timerLevel));
    }
  private:
    //! Total time spent on this level in this object and all children.
    RCP<TimeMonitor> levelTimeMonitor_;
  };

} // namespace MueLu

#endif // MUELU_MONITOR_HPP