/usr/include/trilinos/Zoltan2_AlgSparseMapping.hpp is in libtrilinos-zoltan2-dev 12.12.1-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 | // @HEADER
//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Karen Devine (kddevin@sandia.gov)
// Erik Boman (egboman@sandia.gov)
// Siva Rajamanickam (srajama@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef _ZOLTAN2_ALGDEFAULTMAPPING_HPP_
#define _ZOLTAN2_ALGDEFAULTMAPPING_HPP_
#include <Zoltan2_Standards.hpp>
#include <Zoltan2_Algorithm.hpp>
#include <Zoltan2_PartitioningSolution.hpp>
#include <Zoltan2_Util.hpp>
//////////////////////////////////////////////////////////////////////////////
//! \file Zoltan2_AlgDefaultMapping.hpp
//! \brief Define a default mapping of parts to processors
//
//////////////////////////////////////////////////////////////////////////////
namespace Zoltan2 {
template <typename Adapter>
class AlgDefaultMapping : public Algorithm<Adapter>
{
private:
typedef typename Adapter::lno_t lno_t;
typedef typename Adapter::gno_t gno_t;
typedef typename Adapter::scalar_t scalar_t;
typedef typename Adapter::part_t part_t;
typedef typename Adapter::user_t user_t;
typedef typename Adapter::userCoord_t userCoord_t;
const RCP<const Environment> env;
const RCP<const Comm<int> > problemComm;
const RCP<const typename Adapter::base_adapter_t> adapter;
public:
/*! Constructor
* \param env parameters for the problem and library configuration
* \param problemComm the communicator for the problem
* \param adapter the user's input adapter
*/
AlgDefaultMapping(
const Teuchos::RCP <const Teuchos::Comm<int> > &comm_,
const Teuchos::RCP <const MachineRepresentation<pcoord_t,part_t> > &machine_,
const Teuchos::RCP <const Adapter> &adapter_,
const Teuchos::RCP <const Zoltan2::PartitioningSolution<Adapter> > &psoln_,
const Teuchos::RCP <const Environment> &envConst):
env(env__), comm(comm_), adapter(adapter_),
partIsRank(false), haveContigousParts(false)
rankForPart(Teuchos::null)
{
int nRanks = comm->getSize();
// Get set of parts from partitioning solution or adapter, if provided
// Otherwise, we'll assume set of parts == set of ranks
const *partList;
if (psoln_ != Teuchos::null) {
partList = psoln_->getPartListView();
}
else {
adapter->getPartsView(partList);
}
// Compute maxPart, nParts
typedef typename Tpetra::Map<lno_t, part_t> tpetraMap_t
Teuchos::RCP<tpetraMap_t> tmap;
part_t minPart, maxPart;
if (partList == NULL) {
// Parts for IDs are the same as ranks
nParts = nRanks;
maxPart = nRanks-1;
minPart = 0;
}
else {
// Parts were provided by partitioning solution or input adapter
// Find unique parts on this rank,
// as Tpetra::Map does not like duplicate GIDs within a rank
size_t nLocal = adapter->getLocalNumIDs();
std::set<part_t> unique(nLocal);
for (size_t i; i < adapter->getLocalNumIDs(); i++)
unique.insert(partList[i]);
size_t nUnique = unique.size();
Array<const part_t> uniquePartList(nUnique);
size_t k = 0;
for (typename std::set<part_t>::iterator it = set.begin();
it != set.end(); it++)
uniquePartList[k++] = *it;
// Use Tpetra::Map to find the max, min, total part.
global_size_t nGlobalElts =
Teuchos::OrdinalTraits<Tpetra::global_size_t>::invalid();
tmap = rcp(new tpetraMap_t(nGlobalElts, uniquePartList(), 0, comm));
nParts = as<part_t>(tmap->getGlobalNumElements());
minPart = tmap->getMinAllGlobalIndex();
maxPart = tmap->getMaxAllGlobalIndex();
}
nParts_Div_nRanks = nParts / nRanks;
nParts_Mod_nRanks = nParts % nRanks;
// Determine number of unique parts, as well as min and max part
// Can probably use a Tpetra Map.
if (maxPart < nRanks)
partIsRank = true; // Most common case
if ((minPart == 0) && (maxPart == nParts-1))
// Have a contiguous set of parts; can use simplest default mapping
haveContiguousParts = true;
if (!partIsRank && !haveContiguousParts) {
// Use Tpetra createOneToOne to map parts to ranks
Teuchos::RCP<tpetraMap_t> oneToOneMap = Tpetra::createOneToOne(tmap);
// Each rank needs names of all parts
// Should we gather map to one rank, or copy to all?
// I don't know how to do it.
Teuchos::RCP<tpetraMap_t> gatheredMap = ;
Teuchos::ArrayView<const part_t> allParts =
gatheredMap->getNodeElementList();
// Look up the rank for all parts assigned by oneToOneMap
Teuchos::Array<int> allRanks(allParts.size());
oneToOneMap->getRemoveIndexList(allParts, allRanks());
for (size_t i = 0; i < allPart.size())
(*rankForPart)[allParts[i]] = allRanks[i];
}
}
void map(Teuchos::RCP<MappingSolution<Adapter> > msoln) {
// Mapping was computed in constructor;
// nothing to do here sine we implement getRankForPart and
// getPartsForRankView. (If we didn't we would need to store
// the mapping in the soln here.)
}
int getRankForPart(part_t p) {
if (p < 0 || p > maxPart)
throw std::runtime_error("Invalid part in getRankForPart");
// Most common case: at most one part per rank
if (partIsRank)
return as<int>(p);
// Multiple parts per rank
if (haveContiguousParts) {
int tmp = p / nParts_Div_nRanks;
while (firstContiguousPart(tmp) > p) tmp--;
while (firstContiguousPart(tmp+1) < p) tmp++;
return tmp;
}
// None of the simple schemes apply; use the unordered_map.
return rankForPart[p];
}
void getPartsForRankView(int rank, part_t &numParts, part_t *&parts)
{
// Will need to construct the arrays if this function is called.
// Will not work if this is a const method.
partsForRankIdx = rcp(new part_t[nRanks+1]);
partsForRank = rcp(new part_t[nParts]);
}
void map(const RCP<PartitioningSolution<Adapter> > &solution);
private:
inline part_t firstContiguousPart(int rank) {
// For contiguous part assignments, the first part assigned to rank
return (rank * nParts_Div_nRanks + min(rank, nParts_Mod_nRanks));
}
};
} // namespace Zoltan2
#endif
|