/usr/include/ncbi/entrez2.h is in libvibrant6-dev 6.1.20170106-2.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 | /* entrez2.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: entrez2.h
*
* Author: Jonathan Kans, Greg Schuler, Jonathan Epstein, Tim Ford
*
* Version Creation Date: 10/30/01
*
* $Revision: 6.5 $
*
* File Description:
*
* Modifications:
* --------------------------------------------------------------------------
*
* ==========================================================================
*/
#ifndef _ENTREZ2_
#define _ENTREZ2_
#include <vibrant.h>
#include <ent2api.h>
#ifdef __cplusplus
extern "C" {
#endif
/*
* The following callback types help process requests between forms. The
* form passed in belongs to the calling form, not the target form. It is
* up to the application to pass the request to the appropriate form. This
* way, there can be multiple term list and docsum forms, and the window
* handles are not global to the libraries.
*/
typedef void (*E2RetrieveDocsProc) (ButtoN buttonPressed);
typedef void (*E2RetrieveUidProc) (ForM queryForm, Int4 uid, CharPtr dbName);
typedef void (*E2ProjectToFormProc) (ForM f, Pointer proj);
typedef void (*E2SimpleSeqProc) (ForM f, ValNodePtr simpleSeqs);
typedef void (*E2NamedUidListProc) (ForM f, CharPtr term, Int4 num, Int4Ptr uids, Int2 db);
typedef void (*E2LaunchViewerProc) (ForM f, Int4 uid, Int2 numAlign, Int4Ptr alignuids, Int2 db, Int2 launchType);
/*
* The Entrez2GlobalsPtr may be registered with a call to SetAppProperty
* e.g., SetAppProperty ("Entrez2Globals", &entrezglobals), where entrezglobals
* is a persistent structure filled with Vibrant objects or callback
* function pointers specific for a given application.
*/
typedef struct entrez2globals {
IteM parentsPersist;
IteM alignWithChecked;
ChoicE seqComplex;
ChoicE strucComplex;
ChoicE strucModels;
FonT docsumFont;
Boolean persistDefault;
Boolean alignDefault;
Boolean popdownBehavior;
Boolean lookupDirect;
Boolean showAsn;
Boolean sortFields;
CharPtr initDatabase;
CharPtr initField;
CharPtr initMode;
WndActnProc createTrmLstMenus;
WndActnProc createDocSumMenus;
E2RetrieveDocsProc retrieveDocsProc;
E2RetrieveUidProc retrieveUidProc;
E2ProjectToFormProc retrieveProjectProc;
E2SimpleSeqProc retrieveSimpleProc;
E2NamedUidListProc loadNamedUidProc;
E2LaunchViewerProc launchViewerProc;
} Entrez2Globals, PNTR Entrez2GlobalsPtr;
NLM_EXTERN ForM CreateTermlistForm (
Int2 left,
Int2 top,
CharPtr title,
WndActnProc activateCallback,
FormMessageFunc messagesCallback,
E2RetrieveDocsProc retrieveCallback,
E2RetrieveUidProc retrieveUidCallback,
Boolean explodeToggle,
Boolean advancedQueryToggle
);
NLM_EXTERN ForM CreateDocsumForm (
Int2 left,
Int2 top,
CharPtr title,
WndActnProc activate,
FormMessageFunc messages,
E2NamedUidListProc refineUidCallback,
Boolean delayedNeighbor
);
NLM_EXTERN void ShowNewNetConfigForm (
WndActnProc activate,
FormMessageFunc messages,
VoidProc accepted,
VoidProc cancelled,
VoidProc turnedOff,
Boolean netCurrentlyOn
);
NLM_EXTERN void RetrieveDocs (ForM f, Int2 num, Int2 parents, Int4Ptr uids, CharPtr dbName);
NLM_EXTERN void LaunchRecViewer (ForM f, Int4 uid, Int2 numAlign, Int4Ptr alignuids, Int2 db, Int2 launchType);
NLM_EXTERN Boolean RefineUIDs (ForM f, CharPtr term, Int4 num, Int4Ptr uids, Int2 db);
NLM_EXTERN Boolean ShowASN (void);
NLM_EXTERN void DisplayEntrezReply (Entrez2ReplyPtr e2ry);
NLM_EXTERN void DisplayEntrezRequest (Entrez2RequestPtr e2rq);
NLM_EXTERN Int2 DBGetIDFromName (CharPtr dbName);
NLM_EXTERN CharPtr DBGetNameFromID (Int2 dbId);
NLM_EXTERN Entrez2InfoPtr Query_GetInfo (void);
NLM_EXTERN Entrez2BooleanReplyPtr Query_FetchUIDs (ForM f);
NLM_EXTERN Int4 Query_FetchCount (ForM f);
NLM_EXTERN Int4 Query_FetchParsedCount (ForM f);
NLM_EXTERN Entrez2TermListPtr Query_FetchSeveralCounts (CharPtr dbName, CharPtr fieldName, CharPtr searchStr, Int2 count);
NLM_EXTERN Boolean TermList_UnselectAll (ForM f);
NLM_EXTERN EnumFieldAssocPtr CreateDatabaseAlist (Entrez2InfoPtr e2ip);
NLM_EXTERN EnumFieldAssocPtr CreateFieldAlist (Entrez2DbInfoPtr e2db);
#ifdef __cplusplus
}
#endif
#endif /* _ENTREZ2_ */
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