/usr/bin/exact-tandems is in mummer 3.23+dfsg-3.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | #!/bin/sh -e
#
# Find exact tandem repeats in specified file involving an
# exact duplicate of at least the specified length
usage () {
echo "Usage: `basename $0` <file> <min-match-len>"
return 67 # EX_USAGE
}
if [ $# -ne 2 ] ; then
echo "You provided $# arguments instead of 2."
usage
fi
filename="$1"
matchlen="$2"
bindir=/usr/bin
scriptdir=/usr/lib/mummer
if [ ! -e "$filename" ] ; then
echo "File $filename does not exist."
usage
fi
echo "Finding matches"
$bindir/repeat-match -t -n $matchlen "$filename" | tail +3 > $$.tmp.matches
# This is default behavior when shell started with -e
# if ($status != 0) exit -1
echo "Tandem repeats"
sort -k1n -k2n $$.tmp.matches | awk -f $
$scriptdir/tandem-repeat.awk
rm -f $$.tmp.matches
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