This package is 2.2 MB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/p/phast/phast_1.4+dfsg-1_amd64.deb
.
View its full control file here:
debian/control.
phylogenetic analysis with space/time models
This package depends on:
libc6 (>= 2.23), liblapack3 | liblapack.so.3, libpcre3.
This package does not recommend any other package.
This package does not suggest any other package.
This package does not conflict with any other package.
phast 1.4+dfsg-1 is in ubuntu - bionic / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/all_dists
|
application/x-sharedlib | root:root | 0o755 | 618.1 KB |
/usr/bin/base_evolve
|
application/x-sharedlib | root:root | 0o755 | 651.7 KB |
/usr/bin/chooseLines
|
application/x-sharedlib | root:root | 0o755 | 614.1 KB |
/usr/bin/clean_genes
|
application/x-sharedlib | root:root | 0o755 | 652.9 KB |
/usr/bin/consEntropy
|
application/x-sharedlib | root:root | 0o755 | 619.8 KB |
/usr/bin/convert_coords
|
application/x-sharedlib | root:root | 0o755 | 618.1 KB |
/usr/bin/display_rate_matrix
|
application/x-sharedlib | root:root | 0o755 | 638.1 KB |
/usr/bin/dless
|
application/x-sharedlib | root:root | 0o755 | 730.8 KB |
/usr/bin/dlessP
|
application/x-sharedlib | root:root | 0o755 | 779.7 KB |
/usr/bin/draw_tree
|
application/x-sharedlib | root:root | 0o755 | 614.1 KB |
/usr/bin/eval_predictions
|
application/x-sharedlib | root:root | 0o755 | 626.1 KB |
/usr/bin/exoniphy
|
application/x-sharedlib | root:root | 0o755 | 704.6 KB |
/usr/bin/hmm_train
|
application/x-sharedlib | root:root | 0o755 | 662.1 KB |
/usr/bin/hmm_tweak
|
application/x-sharedlib | root:root | 0o755 | 662.1 KB |
/usr/bin/hmm_view
|
application/x-sharedlib | root:root | 0o755 | 658.1 KB |
/usr/bin/indelFit
|
application/x-sharedlib | root:root | 0o755 | 644.1 KB |
/usr/bin/indelHistory
|
application/x-sharedlib | root:root | 0o755 | 631.7 KB |
/usr/bin/maf_parse
|
application/x-sharedlib | root:root | 0o755 | 650.8 KB |
/usr/bin/makeHKY
|
application/x-sharedlib | root:root | 0o755 | 615.1 KB |
/usr/bin/modFreqs
|
application/x-sharedlib | root:root | 0o755 | 614.5 KB |
/usr/bin/msa_diff
|
application/x-sharedlib | root:root | 0o755 | 619.1 KB |
/usr/bin/msa_split
|
application/x-sharedlib | root:root | 0o755 | 635.0 KB |
/usr/bin/msa_view
|
application/x-sharedlib | root:root | 0o755 | 639.3 KB |
/usr/bin/pbsDecode
|
application/x-sharedlib | root:root | 0o755 | 639.3 KB |
/usr/bin/pbsEncode
|
application/x-sharedlib | root:root | 0o755 | 639.3 KB |
/usr/bin/pbsScoreMatrix
|
application/x-sharedlib | root:root | 0o755 | 642.2 KB |
/usr/bin/pbsTrain
|
application/x-sharedlib | root:root | 0o755 | 643.8 KB |
/usr/bin/phast
|
application/x-sharedlib | root:root | 0o755 | 6.9 KB |
/usr/bin/phastBias
|
application/x-sharedlib | root:root | 0o755 | 760.7 KB |
/usr/bin/phastCons
|
application/x-sharedlib | root:root | 0o755 | 756.5 KB |
/usr/bin/phastMotif
|
application/x-sharedlib | root:root | 0o755 | 674.1 KB |
/usr/bin/phastOdds
|
application/x-sharedlib | root:root | 0o755 | 664.3 KB |
/usr/bin/phyloBoot
|
application/x-sharedlib | root:root | 0o755 | 661.4 KB |
/usr/bin/phyloFit
|
application/x-sharedlib | root:root | 0o755 | 733.2 KB |
/usr/bin/phyloP
|
application/x-sharedlib | root:root | 0o755 | 769.9 KB |
/usr/bin/prequel
|
application/x-sharedlib | root:root | 0o755 | 653.9 KB |
/usr/bin/refeature
|
application/x-sharedlib | root:root | 0o755 | 618.6 KB |
/usr/bin/stringiphy
|
application/x-sharedlib | root:root | 0o755 | 618.1 KB |
/usr/bin/tree_doctor
|
application/x-sharedlib | root:root | 0o755 | 626.7 KB |
/usr/bin/treeGen
|
application/x-sharedlib | root:root | 0o755 | 623.4 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/phast/
|
root:root | 0o755 | ||
/usr/share/doc/phast/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 154 bytes |
/usr/share/doc/phast/copyright
|
text/plain | root:root | 0o644 | 2.0 KB |
/usr/share/man/
|
root:root | 0o755 | ||
/usr/share/man/man1/
|
root:root | 0o755 | ||
/usr/share/man/man1/all_dists.1.gz
|
application/gzip | root:root | 0o644 | 543 bytes |
/usr/share/man/man1/base_evolve.1.gz
|
application/gzip | root:root | 0o644 | 826 bytes |
/usr/share/man/man1/chooseLines.1.gz
|
application/gzip | root:root | 0o644 | 291 bytes |
/usr/share/man/man1/clean_genes.1.gz
|
application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/consEntropy.1.gz
|
application/gzip | root:root | 0o644 | 874 bytes |
/usr/share/man/man1/convert_coords.1.gz
|
application/gzip | root:root | 0o644 | 694 bytes |
/usr/share/man/man1/display_rate_matrix.1.gz
|
application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/dless.1.gz
|
application/gzip | root:root | 0o644 | 1.7 KB |
/usr/share/man/man1/dlessP.1.gz
|
application/gzip | root:root | 0o644 | 801 bytes |
/usr/share/man/man1/draw_tree.1.gz
|
application/gzip | root:root | 0o644 | 427 bytes |
/usr/share/man/man1/eval_predictions.1.gz
|
application/gzip | root:root | 0o644 | 1.1 KB |
/usr/share/man/man1/exoniphy.1.gz
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application/gzip | root:root | 0o644 | 3.5 KB |
/usr/share/man/man1/hmm_train.1.gz
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application/gzip | root:root | 0o644 | 1.2 KB |
/usr/share/man/man1/hmm_tweak.1.gz
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application/gzip | root:root | 0o644 | 979 bytes |
/usr/share/man/man1/hmm_view.1.gz
|
application/gzip | root:root | 0o644 | 575 bytes |
/usr/share/man/man1/indelFit.1.gz
|
application/gzip | root:root | 0o644 | 818 bytes |
/usr/share/man/man1/indelHistory.1.gz
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application/gzip | root:root | 0o644 | 823 bytes |
/usr/share/man/man1/maf_parse.1.gz
|
application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/makeHKY.1.gz
|
application/gzip | root:root | 0o644 | 575 bytes |
/usr/share/man/man1/modFreqs.1.gz
|
application/gzip | root:root | 0o644 | 283 bytes |
/usr/share/man/man1/msa_diff.1.gz
|
application/gzip | root:root | 0o644 | 520 bytes |
/usr/share/man/man1/msa_split.1.gz
|
application/gzip | root:root | 0o644 | 3.0 KB |
/usr/share/man/man1/msa_view.1.gz
|
application/gzip | root:root | 0o644 | 5.0 KB |
/usr/share/man/man1/pbsDecode.1.gz
|
application/gzip | root:root | 0o644 | 575 bytes |
/usr/share/man/man1/pbsEncode.1.gz
|
application/gzip | root:root | 0o644 | 590 bytes |
/usr/share/man/man1/pbsScoreMatrix.1.gz
|
application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man1/pbsTrain.1.gz
|
application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/phast.1.gz
|
application/gzip | root:root | 0o644 | 491 bytes |
/usr/share/man/man1/phastBias.1.gz
|
application/gzip | root:root | 0o644 | 2.2 KB |
/usr/share/man/man1/phastCons.1.gz
|
application/gzip | root:root | 0o644 | 6.6 KB |
/usr/share/man/man1/phastMotif.1.gz
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application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/man/man1/phastOdds.1.gz
|
application/gzip | root:root | 0o644 | 2.0 KB |
/usr/share/man/man1/phyloBoot.1.gz
|
application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/phyloFit.1.gz
|
application/gzip | root:root | 0o644 | 8.2 KB |
/usr/share/man/man1/phyloP.1.gz
|
application/gzip | root:root | 0o644 | 4.9 KB |
/usr/share/man/man1/prequel.1.gz
|
application/gzip | root:root | 0o644 | 2.7 KB |
/usr/share/man/man1/refeature.1.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man1/stringiphy.1.gz
|
application/gzip | root:root | 0o644 | 349 bytes |
/usr/share/man/man1/tree_doctor.1.gz
|
application/gzip | root:root | 0o644 | 2.3 KB |
/usr/share/man/man1/treeGen.1.gz
|
application/gzip | root:root | 0o644 | 702 bytes |
/usr/share/phast/
|
root:root | 0o755 | ||
/usr/share/phast/data/
|
root:root | 0o755 | ||
/usr/share/phast/data/exoniphy/
|
root:root | 0o755 | ||
/usr/share/phast/data/exoniphy/default.cm
|
text/plain | root:root | 0o644 | 271 bytes |
/usr/share/phast/data/exoniphy/default-no-cns.cm
|
text/plain | root:root | 0o644 | 244 bytes |
/usr/share/phast/data/exoniphy/mammals/
|
root:root | 0o755 | ||
/usr/share/phast/data/exoniphy/mammals/cftr25_hybrid.nh
|
text/plain | root:root | 0o644 | 629 bytes |
/usr/share/phast/data/exoniphy/mammals/default.hmm
|
text/plain | root:root | 0o644 | 15.0 KB |
/usr/share/phast/data/exoniphy/mammals/default-indels.hmm
|
text/plain | root:root | 0o644 | 715.3 KB |
/usr/share/phast/data/exoniphy/mammals/default-indels-no-cns.hmm
|
text/plain | root:root | 0o644 | 664.4 KB |
/usr/share/phast/data/exoniphy/mammals/default-no-cns.hmm
|
text/plain | root:root | 0o644 | 14.1 KB |
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-1.mod
|
text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-2.mod
|
text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-3.mod
|
text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-4.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-5.mod
|
text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-6.mod
|
text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-1.mod
|
text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-2.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-3.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-4.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-5.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-6.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.cds3'ss.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-1.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-2.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-3.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.prestart-1.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.prestart-2.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.prestart-3.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.prestart-4.mod
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text/plain | root:root | 0o644 | 392 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.start-1.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.start-2.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.start-3.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.stop-1.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.stop-2.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/hky.stop-3.mod
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text/plain | root:root | 0o644 | 363 bytes |
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc4.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc5.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc4.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc5.mod
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text/plain | root:root | 0o644 | 60.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc4.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc5.mod
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text/plain | root:root | 0o644 | 60.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc4.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc5.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.cns.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc4.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc5.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.ncns.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc1.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc2.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc3.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc4.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc5.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.mod
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text/plain | root:root | 0o644 | 48.8 KB |
/usr/share/phast/data/exoniphy/models
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text/plain | root:root | 0o644 | 529 bytes |
/usr/share/phast/data/exoniphy/models-gc1
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text/plain | root:root | 0o644 | 549 bytes |
/usr/share/phast/data/exoniphy/models-gc2
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text/plain | root:root | 0o644 | 549 bytes |
/usr/share/phast/data/exoniphy/models-gc3
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text/plain | root:root | 0o644 | 549 bytes |
/usr/share/phast/data/exoniphy/models-gc4
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text/plain | root:root | 0o644 | 549 bytes |
/usr/share/phast/data/exoniphy/models-gc5
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text/plain | root:root | 0o644 | 549 bytes |
/usr/share/phast/data/exoniphy/models-no-cns
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text/plain | root:root | 0o644 | 523 bytes |
/usr/share/phast/data/exoniphy/models-no-cns-gc1
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text/plain | root:root | 0o644 | 539 bytes |
/usr/share/phast/data/exoniphy/models-no-cns-gc2
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text/plain | root:root | 0o644 | 539 bytes |
/usr/share/phast/data/exoniphy/models-no-cns-gc3
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text/plain | root:root | 0o644 | 539 bytes |
/usr/share/phast/data/exoniphy/models-no-cns-gc4
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text/plain | root:root | 0o644 | 539 bytes |
/usr/share/phast/data/exoniphy/models-no-cns-gc5
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text/plain | root:root | 0o644 | 539 bytes |
/usr/share/phast/data/phastCons/
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root:root | 0o755 | ||
/usr/share/phast/data/phastCons/simple-coding.hmm
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text/plain | root:root | 0o644 | 584 bytes |
/usr/share/phast/data/phastCons/simple-coding-indels.hmm
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text/plain | root:root | 0o644 | 100.9 KB |