psortb 3.0.5+dfsg-1ubuntu1 in ubuntu - bionic / universe

About

This package is 15.5 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/p/psortb/psortb_3.0.5+dfsg-1ubuntu1_amd64.deb .

View its full control file here: debian/control.

Description

bacterial localization prediction tool

Relations

This package depends on: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libmodhmm0, libsquid1, libstdc++6 (>= 5), libsvm3, libsvmloc0, perl (>= 5.26.1-5), perlapi-5.26.1, libbio-perl-perl, libalgorithm-svm-perl, pftools.

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

psortb 3.0.5+dfsg-1ubuntu1 is in ubuntu - bionic / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/psort text/x-perl root:root 0o755 15.9 KB
/usr/lib/ root:root 0o755
/usr/lib/psort/ root:root 0o755
/usr/lib/psort/conf/ root:root 0o755
/usr/lib/psort/conf/analysis/ root:root 0o755
/usr/lib/psort/conf/analysis/modhmm/ root:root 0o755
/usr/lib/psort/conf/analysis/modhmm/amino_multi.pri text/plain root:root 0o644 2.5 KB
/usr/lib/psort/conf/analysis/modhmm/replacement_letter_multi.rpl text/plain root:root 0o644 345 bytes
/usr/lib/psort/conf/analysis/modhmm/S_TMHMM_0.92b.hmg text/plain root:root 0o644 90.5 KB
/usr/lib/psort/conf/analysis/motif/ root:root 0o755
/usr/lib/psort/conf/analysis/motif/archaea/ root:root 0o755
/usr/lib/psort/conf/analysis/motif/archaea/changes text/plain root:root 0o644 98 bytes
/usr/lib/psort/conf/analysis/motif/archaea/motifs.txt text/plain root:root 0o644 2.9 KB
/usr/lib/psort/conf/analysis/motif/archaea/notes.txt text/plain root:root 0o644 47 bytes
/usr/lib/psort/conf/analysis/motif/gramneg/ root:root 0o755
/usr/lib/psort/conf/analysis/motif/gramneg/motifs.txt text/plain root:root 0o644 5.0 KB
/usr/lib/psort/conf/analysis/motif/grampos/ root:root 0o755
/usr/lib/psort/conf/analysis/motif/grampos/motifs.txt text/plain root:root 0o644 2.9 KB
/usr/lib/psort/conf/analysis/omp-motif/ root:root 0o755
/usr/lib/psort/conf/analysis/omp-motif/omp-motifs.txt text/plain root:root 0o644 8.1 KB
/usr/lib/psort/conf/analysis/profile/ root:root 0o755
/usr/lib/psort/conf/analysis/profile/archaea/ root:root 0o755
/usr/lib/psort/conf/analysis/profile/archaea/notes.txt text/plain root:root 0o644 47 bytes
/usr/lib/psort/conf/analysis/profile/archaea/profile_ids text/plain root:root 0o644 153 bytes
/usr/lib/psort/conf/analysis/profile/archaea/ps_ALL text/plain root:root 0o644 191.5 KB
/usr/lib/psort/conf/analysis/profile/gramneg/ root:root 0o755
/usr/lib/psort/conf/analysis/profile/gramneg/profile_ids text/plain root:root 0o644 111 bytes
/usr/lib/psort/conf/analysis/profile/gramneg/ps_ALL text/plain root:root 0o644 172.4 KB
/usr/lib/psort/conf/analysis/profile/grampos/ root:root 0o755
/usr/lib/psort/conf/analysis/profile/grampos/profile_ids text/plain root:root 0o644 153 bytes
/usr/lib/psort/conf/analysis/profile/grampos/ps_ALL text/plain root:root 0o644 191.5 KB
/usr/lib/psort/conf/analysis/sclblast/ root:root 0o755
/usr/lib/psort/conf/analysis/sclblast/archaea/ root:root 0o755
/usr/lib/psort/conf/analysis/sclblast/archaea/notes text/plain root:root 0o644 115 bytes
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast text/plain root:root 0o644 4.8 MB
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast+swissprot+some_manual text/plain root:root 0o644 1.2 MB
/usr/lib/psort/conf/analysis/sclblast/gramneg/ root:root 0o755
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast text/plain root:root 0o644 5.5 MB
/usr/lib/psort/conf/analysis/sclblast/grampos/ root:root 0o755
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast text/plain root:root 0o644 4.4 MB
/usr/lib/psort/conf/analysis/sclblast/makedb.sh text/x-shellscript root:root 0o755 293 bytes
/usr/lib/psort/conf/analysis/signal/ root:root 0o755
/usr/lib/psort/conf/analysis/signal/archaea/ root:root 0o755
/usr/lib/psort/conf/analysis/signal/archaea/check-sig text/x-perl root:root 0o755 458 bytes
/usr/lib/psort/conf/analysis/signal/archaea/model.hmm text/plain root:root 0o644 24.7 KB
/usr/lib/psort/conf/analysis/signal/archaea/model.svm text/plain root:root 0o644 62.3 KB
/usr/lib/psort/conf/analysis/signal/archaea/notes text/plain root:root 0o644 66 bytes
/usr/lib/psort/conf/analysis/signal/gramneg/ root:root 0o755
/usr/lib/psort/conf/analysis/signal/gramneg/check-sig text/x-perl root:root 0o755 458 bytes
/usr/lib/psort/conf/analysis/signal/gramneg/model.hmm text/plain root:root 0o644 8.0 KB
/usr/lib/psort/conf/analysis/signal/gramneg/model.svm text/plain root:root 0o644 55.9 KB
/usr/lib/psort/conf/analysis/signal/grampos/ root:root 0o755
/usr/lib/psort/conf/analysis/signal/grampos/check-sig text/x-perl root:root 0o755 458 bytes
/usr/lib/psort/conf/analysis/signal/grampos/model.hmm text/plain root:root 0o644 24.7 KB
/usr/lib/psort/conf/analysis/signal/grampos/model.svm text/plain root:root 0o644 62.3 KB
/usr/lib/psort/conf/analysis/subloc/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/archaea/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt text/plain root:root 0o644 17.0 KB
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/SVM_MODEL.txt text/plain root:root 0o644 1.9 MB
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt text/plain root:root 0o644 9.0 KB
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/SVM_MODEL.txt text/plain root:root 0o644 3.7 MB
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt text/plain root:root 0o644 12.8 KB
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/SVM_MODEL.txt text/plain root:root 0o644 4.6 MB
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt text/plain root:root 0o644 168.1 KB
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/SVM_MODEL.txt text/plain root:root 0o644 13.1 MB
/usr/lib/psort/conf/analysis/subloc/archaea/notes.txt text/plain root:root 0o644 38 bytes
/usr/lib/psort/conf/analysis/subloc/gramneg/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt text/plain root:root 0o644 112.9 KB
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/SVM_MODEL.txt text/plain root:root 0o644 16.1 MB
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt text/plain root:root 0o644 193.7 KB
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/SVM_MODEL.txt text/plain root:root 0o644 7.5 MB
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt text/plain root:root 0o644 157.1 KB
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/SVM_MODEL.txt text/plain root:root 0o644 13.0 MB
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt text/plain root:root 0o644 269.0 KB
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/SVM_MODEL.txt text/plain root:root 0o644 5.1 MB
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt text/plain root:root 0o644 171.2 KB
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/SVM_MODEL.txt text/plain root:root 0o644 8.1 MB
/usr/lib/psort/conf/analysis/subloc/grampos/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt text/plain root:root 0o644 26.9 KB
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/SVM_MODEL.txt text/plain root:root 0o644 2.1 MB
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt text/plain root:root 0o644 69.8 KB
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/SVM_MODEL.txt text/plain root:root 0o644 1.6 MB
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt text/plain root:root 0o644 1.0 MB
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/SVM_MODEL.txt text/plain root:root 0o644 5.1 MB
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/ root:root 0o755
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt text/plain root:root 0o644 164.7 KB
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/SVM_MODEL.txt text/plain root:root 0o644 11.2 MB
/usr/lib/psort/conf/output/ root:root 0o755
/usr/lib/psort/conf/output/bayesian/ root:root 0o755
/usr/lib/psort/conf/output/bayesian/archaea/ root:root 0o755
/usr/lib/psort/conf/output/bayesian/archaea/bayes.model text/plain root:root 0o644 5.5 KB
/usr/lib/psort/conf/output/bayesian/gramneg/ root:root 0o755
/usr/lib/psort/conf/output/bayesian/gramneg/bayes.model text/plain root:root 0o644 7.2 KB
/usr/lib/psort/conf/output/bayesian/gramneg/bayes-rpc.model text/plain root:root 0o644 7.2 KB
/usr/lib/psort/conf/output/bayesian/grampos/ root:root 0o755
/usr/lib/psort/conf/output/bayesian/grampos/bayes.model text/plain root:root 0o644 5.5 KB
/usr/lib/psort/conf/output/bayesian/grampos/bayes-rpc.model text/plain root:root 0o644 6.0 KB
/usr/lib/x86_64-linux-gnu/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM/Hit/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM/Hit/Domain.pm text/plain root:root 0o644 2.4 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM/Hit/Global.pm text/plain root:root 0o644 1.1 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM/Hit.pm text/plain root:root 0o644 935 bytes
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM.pm text/plain root:root 0o644 3.3 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Algorithm/HMM/Report.pm text/plain root:root 0o644 2.1 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Algorithm/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Algorithm/HMM/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Algorithm/HMM/autosplit.ix text/plain root:root 0o644 95 bytes
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Algorithm/HMM/HMM.so application/x-sharedlib root:root 0o644 185.9 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/PSort/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/PSort/ModHMM/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/PSort/ModHMM/autosplit.ix text/plain root:root 0o644 104 bytes
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/PSort/ModHMM/ModHMM.so application/x-sharedlib root:root 0o644 13.8 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/PSort/SVMLoc/ root:root 0o755
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/usr/lib/x86_64-linux-gnu/perl5/5.26/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so application/x-sharedlib root:root 0o644 21.9 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/ root:root 0o755
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/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/Motif/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/Motif/Match.pm text/plain root:root 0o644 3.5 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/Motif/Pattern.pm text/plain root:root 0o644 3.3 KB
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/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Constants.pm text/plain root:root 0o644 1.8 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Install.pm text/plain root:root 0o644 4.0 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/ModHMM.pm text/plain root:root 0o644 3.3 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/ root:root 0o755
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/AnalysisI.pm text/plain root:root 0o644 2.0 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/Bayesian.pm text/plain root:root 0o644 4.7 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/HMMTOP.pm text/plain root:root 0o644 3.6 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/InputI.pm text/plain root:root 0o644 1.9 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/ModuleI.pm text/x-c++ root:root 0o644 3.2 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/ModHMM.pm text/plain root:root 0o644 4.0 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/Motif.pm text/plain root:root 0o644 2.6 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/Null.pm text/plain root:root 0o644 815 bytes
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/OMPMotif.pm text/plain root:root 0o644 2.9 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/OutputI.pm text/plain root:root 0o644 2.0 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/Profile.pm text/plain root:root 0o644 1.6 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/Rules.pm text/plain root:root 0o644 3.2 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/SCLBlast.pm text/plain root:root 0o644 3.2 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/Signal.pm text/plain root:root 0o644 3.3 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/SVMLocApache.pm text/plain root:root 0o644 2.7 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Module/SVMLoc.pm text/plain root:root 0o644 2.0 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Pathway.pm text/plain root:root 0o644 6.7 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort.pm text/plain root:root 0o644 8.6 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Profile/ root:root 0o755
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/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/Report/ root:root 0o755
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/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/PSort/XMLRPC/ root:root 0o755
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/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/Run/SCLBlast/Hit.pm text/plain root:root 0o644 2.9 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/Run/SCLBlastLocal.pm text/plain root:root 0o644 5.1 KB
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/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/Signal/Report.pm text/plain root:root 0o644 2.5 KB
/usr/lib/x86_64-linux-gnu/perl5/5.26/Bio/Tools/SVMLoc.pm text/plain root:root 0o644 9.3 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/psortb/ root:root 0o755
/usr/share/doc/psortb/changelog.Debian.gz application/gzip root:root 0o644 655 bytes
/usr/share/doc/psortb/copyright text/plain root:root 0o644 1.7 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/psort.1.gz application/gzip root:root 0o644 835 bytes
/usr/share/man/man3/ root:root 0o755
/usr/share/man/man3/Algorithm::HMM.3pm.gz application/gzip root:root 0o644 1.4 KB
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/usr/share/man/man3/Bio::Tools::SVMLoc.3pm.gz application/gzip root:root 0o644 2.9 KB

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