This file is indexed.

/usr/lib/python2.7/dist-packages/PySPH-1.0a4.dev0-py2.7-linux-x86_64.egg/pysph/base/tests/test_cython_generator.py is in python-pysph 0~20160514.git91867dc-4build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
"""Test code for Cython code generation.
"""
import unittest
from textwrap import dedent
from math import pi, sin

from pysph.base.config import get_config, set_config
from pysph.base.cython_generator import (CythonGenerator, CythonClassHelper,
    KnownType, all_numeric)

def declare(*args):
    pass

class BasicEq:
    def __init__(self, hidden=None, rho=0.0, c=0.0):
        self.rho = rho
        self.c = c
        self._hidden = ['a', 'b']

class EqWithMethod(BasicEq):
    def func(self, d_idx=0, d_x=[0.0, 0.0]):
        tmp = abs(self.rho*self.c)*sin(pi*self.c)
        d_x[d_idx] = d_x[d_idx]*tmp

class EqWithReturn(BasicEq):
    def func(self, d_idx=0, d_x=[0.0, 0.0]):
        return d_x[d_idx]

class EqWithKnownTypes:
    def some_func(self, d_idx, d_p, WIJ, DWIJ, user, d_user, s_user):
        d_p[d_idx] = WIJ*DWIJ[0]

class EqWithMatrix:
    def func(self, d_idx, d_x=[0.0, 0.0]):
        mat = declare('matrix((2,2))')
        mat[0][0] = d_x[d_idx]
        vec = declare('matrix((3,))')
        vec[0] = d_x[d_idx]

class EqWithDeclare:
    def func(self, d_idx, d_x=[0.0, 0.0]):
        val = declare('float')
        val = d_x[d_idx]
        index = declare('unsigned int')
        index = d_idx


def func_with_return(d_idx, d_x, x=0.0):
    x += 1
    return d_x[d_idx] + x

def simple_func(d_idx, d_x, x=0.0):
    d_x[d_idx] += x


class TestBase(unittest.TestCase):
    def assert_code_equal(self, result, expect):
        expect = expect.strip()
        result = result.strip()
        msg = 'EXPECTED:\n%s\nGOT:\n%s'%(expect, result)
        self.assertEqual(expect, result, msg)


class TestMiscUtils(TestBase):

    def test_all_numeric(self):
        x = [1, 2, 3.0]
        self.assertTrue(all_numeric(x))
        try:
            x = [0.0, 1, long(3)]
        except NameError:
            x = [0.0, 1, 3]
        self.assertTrue(all_numeric(x))
        x = [0.0, 1.0, '']
        self.assertFalse(all_numeric(x))

    def test_detect_type(self):
        cases = [(('d_something', None), 'double*'),
                 (('s_something', None), 'double*'),
                 (('d_idx', 0), 'long'),
                 (('x', 1), 'long'),
                 (('s', 'asdas'), 'str'),
                 (('junk', 1.0), 'double'),
                 (('y', [0.0, 1]), 'double*'),
                 (('y', [0, 1, 0]), 'double*'),
                 (('y', None), 'object'),
                ]
        cg = CythonGenerator()
        for args, expect in cases:
            msg = 'detect_type(*%r) != %r'%(args, expect)
            self.assertEqual(cg.detect_type(*args), expect, msg)


    def test_cython_class_helper(self):
        code = ('def f(self, x):',
                '        x += 1\n        return x+1')
        c = CythonClassHelper(name='A', public_vars={'x': 'double'},
                              methods=[code])
        expect = dedent("""
        cdef class A:
            cdef public double x
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            def f(self, x):
                x += 1
                return x+1
        """)
        self.assert_code_equal(c.generate().strip(), expect.strip())


class TestCythonCodeGenerator(TestBase):
    def setUp(self):
        get_config().use_openmp = False

    def tearDown(self):
        set_config(None)

    def test_simple_constructor(self):
        cg = CythonGenerator()
        cg.parse(BasicEq())
        expect = dedent("""
        cdef class BasicEq:
            cdef public list _hidden
            cdef public double c
            cdef public double rho
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_simple_method(self):
        cg = CythonGenerator()
        cg.parse(EqWithMethod())
        expect = dedent("""
        cdef class EqWithMethod:
            cdef public list _hidden
            cdef public double c
            cdef public double rho
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline void func(self, long d_idx, double* d_x):
                cdef double tmp
                tmp = abs(self.rho*self.c)*sin(pi*self.c)
                d_x[d_idx] = d_x[d_idx]*tmp
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_honors_use_openmp_setting(self):
        # When
        get_config().use_openmp = True
        # Then
        cg = CythonGenerator()
        cg.parse(EqWithMethod())
        expect = dedent("""
        cdef class EqWithMethod:
            cdef public list _hidden
            cdef public double c
            cdef public double rho
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline void func(self, long d_idx, double* d_x) nogil:
                cdef double tmp
                tmp = abs(self.rho*self.c)*sin(pi*self.c)
                d_x[d_idx] = d_x[d_idx]*tmp
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_python_methods(self):
        cg = CythonGenerator(python_methods=True)
        cg.parse(EqWithMethod())
        expect = dedent("""
        cdef class EqWithMethod:
            cdef public list _hidden
            cdef public double c
            cdef public double rho
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline void func(self, long d_idx, double* d_x):
                cdef double tmp
                tmp = abs(self.rho*self.c)*sin(pi*self.c)
                d_x[d_idx] = d_x[d_idx]*tmp

            cpdef py_func(self, long d_idx, double[:] d_x):
                self.func(d_idx, &d_x[0])
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

        cg.parse(EqWithReturn())
        expect = dedent("""
        cdef class EqWithReturn:
            cdef public list _hidden
            cdef public double c
            cdef public double rho
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline double func(self, long d_idx, double* d_x):
                return d_x[d_idx]

            cpdef double py_func(self, long d_idx, double[:] d_x):
                return self.func(d_idx, &d_x[0])
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

        cg.parse(func_with_return)
        expect = dedent("""
        cdef inline double func_with_return(long d_idx, double* d_x, double x):
            x += 1
            return d_x[d_idx] + x

        cpdef double py_func_with_return(long d_idx, double[:] d_x, double x):
            return func_with_return(d_idx, &d_x[0], x)
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())


    def test_method_with_return(self):
        cg = CythonGenerator()
        cg.parse(EqWithReturn())
        expect = dedent("""
        cdef class EqWithReturn:
            cdef public list _hidden
            cdef public double c
            cdef public double rho
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline double func(self, long d_idx, double* d_x):
                return d_x[d_idx]
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_method_with_matrix(self):
        cg = CythonGenerator()
        cg.parse(EqWithMatrix())
        expect = dedent("""
        cdef class EqWithMatrix:
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline void func(self, long d_idx, double* d_x):
                cdef double mat[2][2]
                mat[0][0] = d_x[d_idx]
                cdef double vec[3]
                vec[0] = d_x[d_idx]
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_method_with_declare(self):
        cg = CythonGenerator()
        cg.parse(EqWithDeclare())
        expect = dedent("""
        cdef class EqWithDeclare:
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline void func(self, long d_idx, double* d_x):
                cdef float val
                val = d_x[d_idx]
                cdef unsigned int index
                index = d_idx
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_method_with_known_types(self):
        cg = CythonGenerator(
            known_types={'WIJ':0.0, 'DWIJ':[0.0, 0.0, 0.0],
                         'user': KnownType('ndarray'),
                         'd_user': KnownType('long*'),
                         's_user': KnownType('int*'),
                         }
        )
        cg.parse(EqWithKnownTypes())
        expect = dedent("""
        cdef class EqWithKnownTypes:
            def __init__(self, **kwargs):
                for key, value in kwargs.items():
                    setattr(self, key, value)

            cdef inline void some_func(self, long d_idx, double* d_p, double WIJ, double* DWIJ, ndarray user, long* d_user, int* s_user):
                d_p[d_idx] = WIJ*DWIJ[0]
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

    def test_wrap_function(self):
        cg = CythonGenerator()
        cg.parse(func_with_return)
        expect = dedent("""
        cdef inline double func_with_return(long d_idx, double* d_x, double x):
            x += 1
            return d_x[d_idx] + x
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())

        cg.parse(simple_func)
        expect = dedent("""
        cdef inline void simple_func(long d_idx, double* d_x, double x):
            d_x[d_idx] += x
        """)
        self.assert_code_equal(cg.get_code().strip(), expect.strip())


if __name__ == '__main__':
    unittest.main()