/usr/lib/R/site-library/annotate/doc/index.html is in r-bioc-annotate 1.56.1+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 | <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head><title>R: Vignettes and other documentation</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<link rel="stylesheet" type="text/css" href="/doc/html/R.css" />
</head><body>
<h1> Vignettes and other documentation
<img class="toplogo" src="/doc/html/Rlogo.svg" alt="[R logo]" />
</h1>
<hr/>
<div style="text-align: center;">
<a href="/doc/html/index.html"><img class="arrow" src="/doc/html/up.jpg" alt="[Top]" /></a>
</div>
<h2>Vignettes from package 'annotate'</h2>
<table width="100%">
<col style="width: 22%;" />
<col style="width: 2%;" />
<col style="width: 50%;" />
<col style="width: 8%;" />
<col style="width: 8%;" />
<col style="width: 8%;" />
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/GOusage.pdf">annotate::GOusage</a></td>
<td></td><td valign="top">Basic GO Usage</td>
<td valign="top"><a href="../../../library/annotate/doc/GOusage.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/GOusage.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/GOusage.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/annotate.pdf">annotate::annotate</a></td>
<td></td><td valign="top">Annotation Overview</td>
<td valign="top"><a href="../../../library/annotate/doc/annotate.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/annotate.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/annotate.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/chromLoc.pdf">annotate::chromLoc</a></td>
<td></td><td valign="top">HowTo: use chromosomal information</td>
<td valign="top"><a href="../../../library/annotate/doc/chromLoc.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/chromLoc.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/chromLoc.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/prettyOutput.pdf">annotate::prettyOutput</a></td>
<td></td><td valign="top">HowTo: Get HTML Output</td>
<td valign="top"><a href="../../../library/annotate/doc/prettyOutput.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/prettyOutput.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/prettyOutput.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/query.pdf">annotate::query</a></td>
<td></td><td valign="top">HOWTO: Use the online query tools</td>
<td valign="top"><a href="../../../library/annotate/doc/query.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/query.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/query.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/useDataPkgs.pdf">annotate::useDataPkgs</a></td>
<td></td><td valign="top">Using Data Packages</td>
<td valign="top"><a href="../../../library/annotate/doc/useDataPkgs.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/useDataPkgs.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/useDataPkgs.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/useHomology.pdf">annotate::useHomology</a></td>
<td></td><td valign="top">Using the homology package</td>
<td valign="top"><a href="../../../library/annotate/doc/useHomology.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/useHomology.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/useHomology.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/annotate/doc/useProbeInfo.pdf">annotate::useProbeInfo</a></td>
<td></td><td valign="top">Using Affymetrix Probe Level Data</td>
<td valign="top"><a href="../../../library/annotate/doc/useProbeInfo.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/annotate/doc/useProbeInfo.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/annotate/doc/useProbeInfo.R">R code</a></td></tr>
</table>
</body></html>
|