/usr/lib/R/site-library/Biobase/help/AnIndex is in r-bioc-biobase 2.38.0-1.
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$,AnnotatedDataFrame-method class.AnnotatedDataFrame
$,eSet-method class.eSet
$<-,AnnotatedDataFrame-method class.AnnotatedDataFrame
$<-,eSet-method class.eSet
$<-,Versions-method class.Versions
aaMap data.aaMap
abstract abstract
abstract,eSet-method class.eSet
abstract,MIAME-method class.MIAME
addVigs2WinMenu addVig2Menu
aggenv internals
aggenv,aggregator-method class.aggregator
aggfun internals
aggfun,aggregator-method class.aggregator
Aggregate Aggregate
aggregator class.aggregator
aggregator-class class.aggregator
AnnotatedDataFrame class.AnnotatedDataFrame
AnnotatedDataFrame,data.frame,data.frame-method class.AnnotatedDataFrame
AnnotatedDataFrame,data.frame,missing-method class.AnnotatedDataFrame
AnnotatedDataFrame,missing,missing-method class.AnnotatedDataFrame
AnnotatedDataFrame-class class.AnnotatedDataFrame
annotatedDataFrameFrom annotatedDataFrameFrom-methods
annotatedDataFrameFrom,AssayData-method annotatedDataFrameFrom-methods
annotatedDataFrameFrom,matrix-method annotatedDataFrameFrom-methods
annotatedDataFrameFrom,NULL-method annotatedDataFrameFrom-methods
annotatedDataset defunct
annotatedDataset-class defunct
annotation,eSet-method class.eSet
annotation<-,eSet,character-method class.eSet
anyMissing anyMissing
as.data.frame.ExpressionSet class.ExpressionSet
AssayData class.AssayData
assayData assayData
assayData,AssayData-method class.AssayData
assayData,eSet-method class.eSet
AssayData-class class.AssayData
assayData<- assayData
assayData<-,eSet,AssayData-method class.eSet
assayData<-,NChannelSet,environment-method class.NChannelSet
assayData<-,NChannelSet,list-method class.NChannelSet
assayDataElement class.eSet
assayDataElement<- class.eSet
assayDataElementNames class.eSet
assayDataElementReplace class.eSet
assayDataNew class.AssayData
assayDataValidMembers class.AssayData
Biobase Biobase-package
biocReposList defunct
cache cache
channel channel
channel,NChannelSet,character-method class.NChannelSet
channelNames channelNames
channelNames,NChannelSet-method class.NChannelSet
channelNames<- channelNames
channelNames<-,NChannelSet,character-method class.NChannelSet
channelNames<-,NChannelSet,list-method class.NChannelSet
characterORMIAME-class class.characterORmiame
class.NChannelSet class.NChannelSet
class:aggregator class.aggregator
class:AnnotatedDataFrame class.AnnotatedDataFrame
class:annotatedDataset defunct
class:characterORMIAME class.characterORmiame
class:container class.container
class:eSet class.eSet
class:ExpressionSet class.ExpressionSet
class:exprList defunct
class:exprMatrix defunct
class:exprSet defunct
class:MIAME class.MIAME
class:MIAxE class.MIAxE
class:MultiSet class.MultiSet
class:phenoData defunct
class:SnpSet class.SnpSet
classVersion classVersion
classVersion,ANY-method classVersion
classVersion,character-method classVersion
classVersion,Versioned-method class.Versioned
classVersion<- classVersion
classVersion<-,Versioned,Versions-method class.Versioned
coerce,AnnotatedDataFrame,data.frame-method class.AnnotatedDataFrame
coerce,data.frame,AnnotatedDataFrame-method class.AnnotatedDataFrame
coerce,eSet,ExpressionSet-method class.ExpressionSet
coerce,eSet,MultiSet-method class.MultiSet
coerce,ExpressionSet,data.frame-method class.ExpressionSet
coerce,exprSet,ExpressionSet-method class.ExpressionSet
coerce,phenoData,AnnotatedDataFrame-method class.AnnotatedDataFrame
coerce,Versions,character-method class.Versions
combine,AnnotatedDataFrame,AnnotatedDataFrame-method class.AnnotatedDataFrame
combine,AssayData,AssayData-method class.AssayData
combine,eSet,ANY-method class.eSet
combine,eSet,eSet-method class.eSet
combine,MIAME,MIAME-method class.MIAME
Compare,character,Versions-method class.Versions
Compare,Versions,character-method class.Versions
Compare,Versions,Versions-method class.Versions
container class.container
container-class class.container
content internals
content,container-method class.container
contents contents
contents,environment-method internals
copyEnv copyEnv
copySubstitute copySubstitute
createPackage createPackage
data.frameOrNULL-class internals
data:aaMap data.aaMap
data:geneCov data.geneData
data:geneCovariate data.geneData
data:geneData data.geneData
data:reporter data.reporter
data:sample.eSet defunct
data:sample.ExpressionSet data.sample.ExpressionSet
data:sample.exprSet defunct
data:sample.exprSet.1 defunct
data:sample.MultiSet data.sample.MultiSet
data:seD data.geneData
description description
description,eSet-method class.eSet
description<- description
description<-,eSet,MIAME-method class.eSet
df2pD defunct
dim,AnnotatedDataFrame-method class.AnnotatedDataFrame
dim,eSet-method class.eSet
dimLabels class.AnnotatedDataFrame
dimLabels,AnnotatedDataFrame-method class.AnnotatedDataFrame
dimLabels<- class.AnnotatedDataFrame
dimLabels<-,AnnotatedDataFrame,character-method class.AnnotatedDataFrame
dimnames class.eSet
dimnames,AnnotatedDataFrame-method class.AnnotatedDataFrame
dimnames,eSet-method class.eSet
dimnames<- class.eSet
dimnames<-,AnnotatedDataFrame-method class.AnnotatedDataFrame
dimnames<-,eSet-method class.eSet
dims dims
dims,eSet-method class.eSet
dumpPackTxt dumpPackTxt
eList defunct
eList,eSet-method defunct
eList<- defunct
eList<-,eSet,AssayData-method defunct
esApply esApply
esApply,ExpressionSet-method class.ExpressionSet
eSet class.eSet
eSet-class class.eSet
experimentData abstract
experimentData,eSet-method class.eSet
experimentData<- abstract
experimentData<-,eSet,MIAME-method class.eSet
expinfo internals
expinfo,MIAME-method class.MIAME
ExpressionSet class.ExpressionSet
ExpressionSet,environment-method class.ExpressionSet
ExpressionSet,matrix-method class.ExpressionSet
ExpressionSet,missing-method class.ExpressionSet
ExpressionSet-class class.ExpressionSet
exprList defunct
exprList-class defunct
exprMatrix defunct
exprMatrix-class defunct
exprs exprs
exprs,eSet-method class.eSet
exprs,ExpressionSet-method class.ExpressionSet
exprs,SnpSet-method class.SnpSet
exprs<- exprs
exprs<-,eSet,AssayData-method class.eSet
exprs<-,ExpressionSet,matrix-method class.ExpressionSet
exprs<-,SnpSet,matrix-method class.SnpSet
exprSet defunct
exprSet-class defunct
fData featureData
fData,eSet-method class.eSet
fData<- featureData
fData<-,eSet,data.frame-method class.eSet
featureData featureData
featureData,eSet-method class.eSet
featureData<- featureData
featureData<-,eSet,AnnotatedDataFrame-method class.eSet
featureNames featureNames
featureNames,AnnotatedDataFrame-method class.AnnotatedDataFrame
featureNames,AssayData-method class.AssayData
featureNames,eSet-method class.eSet
featureNames<- featureNames
featureNames<-,AnnotatedDataFrame-method class.AnnotatedDataFrame
featureNames<-,AssayData-method class.AssayData
featureNames<-,eSet-method class.eSet
fvarLabels featureData
fvarLabels,eSet-method class.eSet
fvarLabels<- featureData
fvarLabels<-,eSet-method class.eSet
fvarMetadata featureData
fvarMetadata,eSet-method class.eSet
fvarMetadata<- featureData
fvarMetadata<-,eSet,data.frame-method class.eSet
geneCov data.geneData
geneCovariate data.geneData
geneData data.geneData
geneNames defunct
geneNames,ExpressionSet-method defunct
geneNames<- defunct
geneNames<-,ExpressionSet,character-method defunct
getExpData defunct
getExpData,eSet,character-method defunct
getPkgVigs getPkgVigs
head.AnnotatedDataFrame class.AnnotatedDataFrame
hybridizations internals
hybridizations,MIAME-method class.MIAME
initfun internals
initfun,aggregator-method class.aggregator
initialize,aggregator-method class.aggregator
initialize,AnnotatedDataFrame-method class.AnnotatedDataFrame
initialize,annotatedDataset-method defunct
initialize,eSet-method class.eSet
initialize,ExpressionSet-method class.ExpressionSet
initialize,exprSet-method defunct
initialize,MultiSet-method class.MultiSet
initialize,NChannelSet-method class.NChannelSet
initialize,phenoData-method defunct
initialize,SnpSet-method class.SnpSet
initialize,Versioned-method class.Versioned
initialize,Versions-method class.Versions
initialize,VersionsNull-method class.VersionsNull
isCurrent isCurrent
isCurrent,ANY,ANY-method isCurrent
isCurrent,MIAME,missing-method class.MIAME
isCurrent,Versioned,character-method class.Versioned
isCurrent,Versioned,missing-method class.Versioned
isUnique isUnique
isVersioned isVersioned
isVersioned,ANY-method isVersioned
isVersioned,character-method isVersioned
isVersioned,Versioned-method class.Versioned
l2e defunct
lcPrefix lcSuffix
lcPrefixC lcSuffix
lcSuffix lcSuffix
length,container-method class.container
listLen listLen
listOrEnv class.eSet
listOrEnv-class internals
locked internals
locked,container-method class.container
makeDataPackage makeDataPackage
makeDataPackage,ANY-method makeDataPackage
makeDataPackage,ExpressionSet-method class.ExpressionSet
matchpt matchpt
MIAME class.MIAME
MIAME-class class.MIAME
MIAxE class.MIAxE
MIAxE-class class.MIAxE
mkScalar ScalarObject-class
multiassign multiassign
MultiSet class.MultiSet
MultiSet-class class.MultiSet
NChannelSet class.NChannelSet
NChannelSet-class class.NChannelSet
ncol,AnnotatedDataFrame-method class.AnnotatedDataFrame
ncol,eSet-method class.eSet
normControls internals
normControls,MIAME-method class.MIAME
note note
notes notes
notes,eSet-method class.eSet
notes,MIAME-method class.MIAME
notes<- notes
notes<-,eSet,ANY-method class.eSet
notes<-,MIAME,character-method class.MIAME
notes<-,MIAME,list-method class.MIAME
openPDF openPDF
openVignette openVignette
otherInfo internals
otherInfo,MIAME-method class.MIAME
package.version package.version
pData phenoData
pData,AnnotatedDataFrame-method class.AnnotatedDataFrame
pData,eSet-method class.eSet
pData<- phenoData
pData<-,AnnotatedDataFrame,data.frame-method class.AnnotatedDataFrame
pData<-,eSet,data.frame-method class.eSet
phenoData phenoData
phenoData,eSet-method class.eSet
phenoData-class defunct
phenoData<- phenoData
phenoData<-,eSet,AnnotatedDataFrame-method class.eSet
preproc class.MIAME
preproc,eSet-method class.eSet
preproc,MIAME-method class.MIAME
preproc<- class.MIAME
preproc<-,eSet-method class.eSet
preproc<-,MIAME-method class.MIAME
protocolData protocolData
protocolData,eSet-method class.eSet
protocolData<- protocolData
protocolData<-,eSet,AnnotatedDataFrame-method protocolData
protocolData<-,eSet,character-method class.eSet
pubMedIds abstract
pubMedIds,eSet-method class.eSet
pubMedIds,MIAME-method class.MIAME
pubMedIds<- abstract
pubMedIds<-,eSet,character-method class.eSet
pubMedIds<-,MIAME,ANY-method class.MIAME
read.AnnotatedDataFrame read.AnnotatedDataFrame
read.exprSet defunct
read.MIAME read.MIAME
read.pD defunct
read.phenoData defunct
readExpressionSet readExpressionSet
reporter data.reporter
reporterNames defunct
reporterNames,eSet-method defunct
reporterNames<- defunct
reporterNames<-,eSet,character-method defunct
reverseSplit reverseSplit
rowMax rowQ
rowMedians rowMedians
rowMedians,ExpressionSet-method rowMedians
rowMedians,matrix-method rowMedians
rowMin rowQ
rowQ rowQ
rowQ,ExpressionSet,numeric-method rowQ
rowQ,matrix,numeric-method rowQ
sample.eSet defunct
sample.ExpressionSet data.sample.ExpressionSet
sample.exprSet defunct
sample.exprSet.1 defunct
sample.MultiSet data.sample.MultiSet
sampleNames featureNames
sampleNames,AnnotatedDataFrame-method class.AnnotatedDataFrame
sampleNames,AssayData-method class.AssayData
sampleNames,eSet-method class.eSet
sampleNames,NChannelSet-method class.NChannelSet
sampleNames<- featureNames
sampleNames<-,AnnotatedDataFrame,ANY-method class.AnnotatedDataFrame
sampleNames<-,AssayData,ANY-method class.AssayData
sampleNames<-,AssayData,list-method class.AssayData
sampleNames<-,eSet,ANY-method class.eSet
sampleNames<-,NChannelSet,list-method class.NChannelSet
samples class.MIAME
samples,MIAME-method class.MIAME
ScalarCharacter-class ScalarObject-class
ScalarInteger-class ScalarObject-class
ScalarLogical-class ScalarObject-class
ScalarNumeric-class ScalarObject-class
ScalarObject-class ScalarObject-class
se.exprs exprs
se.exprs<- exprs
seD data.geneData
selectChannels selectChannels
selectChannels,NChannelSet,character-method class.NChannelSet
selectSome selectSome
show,AnnotatedDataFrame-method class.AnnotatedDataFrame
show,container-method class.container
show,eSet-method class.eSet
show,MIAME-method class.MIAME
show,MIAxE-method class.MIAxE
show,ScalarCharacter-method ScalarObject-class
show,ScalarObject-method ScalarObject-class
show,Versioned-method class.Versioned
show,Versions-method class.Versions
show,VersionsNull-method class.VersionsNull
snpCall snpCall
snpCall,SnpSet-method class.SnpSet
snpCall<- snpCall
snpCall<-,SnpSet,matrix-method class.SnpSet
snpCallProbability snpCall
snpCallProbability,SnpSet-method class.SnpSet
snpCallProbability<- snpCall
snpCallProbability<-,SnpSet,matrix-method class.SnpSet
SnpSet class.SnpSet
SnpSet-class class.SnpSet
storageMode storageMode
storageMode,AssayData-method class.AssayData
storageMode,eSet-method class.eSet
storageMode<- storageMode
storageMode<-,AssayData,character-method class.AssayData
storageMode<-,eSet,character-method class.eSet
strbreak strbreak
subListExtract subListExtract
SW class.eSet
tail.AnnotatedDataFrame class.AnnotatedDataFrame
testBioCConnection testBioCConnection
updateObject,AnnotatedDataFrame-method class.AnnotatedDataFrame
updateObject,eSet-method class.eSet
updateObject,ExpressionSet-method class.ExpressionSet
updateObject,MIAME-method class.MIAME
updateObject,Versions-method class.Versions
updateObjectTo updateObjectTo
updateObjectTo,ANY,ANY-method updateObjectTo
updateObjectTo,eSet,eSet-method class.eSet
updateOldESet updateOldESet
updateOldMiame defunct
userQuery userQuery
validMsg validMsg
varLabels phenoData
varLabels,AnnotatedDataFrame-method class.AnnotatedDataFrame
varLabels,eSet-method class.eSet
varLabels<- phenoData
varLabels<-,AnnotatedDataFrame-method class.AnnotatedDataFrame
varLabels<-,eSet-method class.eSet
varMetadata phenoData
varMetadata,AnnotatedDataFrame-method class.AnnotatedDataFrame
varMetadata,eSet-method class.eSet
varMetadata<- phenoData
varMetadata<-,AnnotatedDataFrame,data.frame-method class.AnnotatedDataFrame
varMetadata<-,eSet,data.frame-method class.eSet
Versioned class.Versioned
Versioned-class class.Versioned
VersionedBiobase class.VersionedBiobase
VersionedBiobase-class class.VersionedBiobase
Versions class.Versions
Versions-class class.Versions
VersionsNull class.VersionsNull
VersionsNull-class class.VersionsNull
write.AnnotatedDataFrame read.AnnotatedDataFrame
write.exprs class.ExpressionSet
write.exprs,ExpressionSet-method class.ExpressionSet
[,AnnotatedDataFrame-method class.AnnotatedDataFrame
[,container-method class.container
[,eSet-method class.eSet
[,Versions-method class.Versions
[<-,Versions-method class.Versions
[[,AnnotatedDataFrame-method class.AnnotatedDataFrame
[[,container-method class.container
[[,eSet-method class.eSet
[[<-,AnnotatedDataFrame-method class.AnnotatedDataFrame
[[<-,container-method class.container
[[<-,eSet-method class.eSet
[[<-,Versions-method class.Versions
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