This file is indexed.

/usr/lib/R/site-library/BiocParallel/help/AnIndex is in r-bioc-biocparallel 1.12.0-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
BiocParallel-package	BiocParallel-package
BatchJobsParam	BatchJobsParam-class
BatchJobsParam-class	BatchJobsParam-class
BiocParallel	BiocParallel-package
BiocParallelParam	BiocParallelParam-class
BiocParallelParam-class	BiocParallelParam-class
bpaggregate	bpaggregate
bpaggregate,ANY,missing-method	bpaggregate
bpaggregate,data.frame,BiocParallelParam-method	bpaggregate
bpaggregate,formula,BiocParallelParam-method	bpaggregate
bpaggregate,matrix,BiocParallelParam-method	bpaggregate
bpbackend	BiocParallelParam-class
bpbackend,BatchJobsParam-method	BatchJobsParam-class
bpbackend,DoparParam-method	DoparParam-class
bpbackend,missing-method	BiocParallelParam-class
bpbackend,SnowParam-method	SnowParam-class
bpbackend<-	BiocParallelParam-class
bpbackend<-,BatchJobsParam	BatchJobsParam-class
bpbackend<-,DoparParam,SOCKcluster-method	DoparParam-class
bpbackend<-,missing,ANY-method	BiocParallelParam-class
bpbackend<-,SnowParam,cluster-method	SnowParam-class
bpcatchErrors	BiocParallelParam-class
bpcatchErrors,BiocParallelParam-method	BiocParallelParam-class
bpcatchErrors<-	BiocParallelParam-class
bpcatchErrors<-,BiocParallelParam,logical-method	BiocParallelParam-class
bpisup	BiocParallelParam-class
bpisup,ANY-method	BiocParallelParam-class
bpisup,BatchJobsParam-method	BatchJobsParam-class
bpisup,DoparParam-method	DoparParam-class
bpisup,missing-method	BiocParallelParam-class
bpisup,MulticoreParam-method	MulticoreParam-class
bpisup,SerialParam-method	SerialParam-class
bpisup,SnowParam-method	SnowParam-class
bpiterate	bpiterate
bpiterate,ANY,ANY,BatchJobsParam-method	bpiterate
bpiterate,ANY,ANY,BiocParallelParam-method	bpiterate
bpiterate,ANY,ANY,DoparParam-method	bpiterate
bpiterate,ANY,ANY,missing-method	bpiterate
bpiterate,ANY,ANY,SerialParam-method	bpiterate
bpiterate,ANY,ANY,SnowParam-method	bpiterate
bpjobname	BiocParallelParam-class
bpjobname,BiocParallelParam-method	BiocParallelParam-class
bpjobname<-	BiocParallelParam-class
bpjobname<-,BiocParallelParam,character-method	BiocParallelParam-class
bplapply	bplapply
bplapply,ANY,BatchJobsParam-method	bplapply
bplapply,ANY,BiocParallelParam-method	bplapply
bplapply,ANY,DoparParam-method	bplapply
bplapply,ANY,list-method	bplapply
bplapply,ANY,missing-method	bplapply
bplapply,ANY,SerialParam-method	bplapply
bplapply,ANY,SnowParam-method	bplapply
bplasterror	bpok
bplog	BiocParallelParam-class
bplog,BiocParallelParam-method	BiocParallelParam-class
bplog,SerialParam-method	SerialParam-class
bplog,SnowParam-method	SnowParam-class
bplog<-	BiocParallelParam-class
bplog<-,SerialParam,logical-method	SerialParam-class
bplog<-,SnowParam,logical-method	SnowParam-class
bplogdir	SnowParam-class
bplogdir,SerialParam-method	SerialParam-class
bplogdir,SnowParam-method	SnowParam-class
bplogdir<-	SnowParam-class
bplogdir<-,SerialParam,character-method	SerialParam-class
bplogdir<-,SnowParam,character-method	SnowParam-class
bploop	bploop
bploop.iterate	bploop
bploop.lapply	bploop
bploop.MPInode	bploop
bploop.SOCK0node	bploop
bploop.SOCKnode	bploop
bpmapply	bpmapply
bpmapply,ANY,BiocParallelParam-method	bpmapply
bpmapply,ANY,list-method	bpmapply
bpmapply,ANY,missing-method	bpmapply
bpnworkers	BiocParallelParam-class
bpok	bpok
bpparam	register
bpprogressbar	BiocParallelParam-class
bpprogressbar,BiocParallelParam-method	BiocParallelParam-class
bpprogressbar<-	BiocParallelParam-class
bpprogressbar<-,BiocParallelParam,logical-method	BiocParallelParam-class
bpresultdir	SnowParam-class
bpresultdir,SnowParam-method	SnowParam-class
bpresultdir<-	SnowParam-class
bpresultdir<-,SnowParam,character-method	SnowParam-class
bpresume	bpok
bpRNGseed	SnowParam-class
bpRNGseed,SnowParam-method	SnowParam-class
bpRNGseed<-	SnowParam-class
bpRNGseed<-,SnowParam,numeric-method	SnowParam-class
bprunMPIslave	bploop
bpschedule	bpschedule
bpschedule,ANY-method	bpschedule
bpschedule,BatchJobsParam-method	BatchJobsParam-class
bpschedule,missing-method	bpschedule
bpschedule,MulticoreParam-method	MulticoreParam-class
bpstart	BiocParallelParam-class
bpstart,ANY-method	BiocParallelParam-class
bpstart,BatchJobsParam-method	BatchJobsParam-class
bpstart,DoparParam-method	DoparParam-class
bpstart,missing-method	BiocParallelParam-class
bpstart,SnowParam-method	SnowParam-class
bpstop	BiocParallelParam-class
bpstop,ANY-method	BiocParallelParam-class
bpstop,BatchJobsParam-method	BatchJobsParam-class
bpstop,DoparParam-method	DoparParam-class
bpstop,missing-method	BiocParallelParam-class
bpstop,SnowParam-method	SnowParam-class
bpstopOnError	BiocParallelParam-class
bpstopOnError,BiocParallelParam-method	BiocParallelParam-class
bpstopOnError<-	BiocParallelParam-class
bpstopOnError<-,BiocParallelParam,logical-method	BiocParallelParam-class
bpstopOnError<-,DoparParam,logical-method	BiocParallelParam-class
bptasks	BiocParallelParam-class
bptasks,BiocParallelParam-method	BiocParallelParam-class
bptasks<-	BiocParallelParam-class
bptasks<-,BiocParallelParam,numeric-method	BiocParallelParam-class
bpthreshold	BiocParallelParam-class
bpthreshold,BiocParallelParam-method	BiocParallelParam-class
bpthreshold,SnowParam-method	SnowParam-class
bpthreshold<-	BiocParallelParam-class
bpthreshold<-,SerialParam,character-method	SerialParam-class
bpthreshold<-,SnowParam,character-method	SnowParam-class
bptimeout	BiocParallelParam-class
bptimeout,BiocParallelParam-method	BiocParallelParam-class
bptimeout<-	BiocParallelParam-class
bptimeout<-,BiocParallelParam,numeric-method	BiocParallelParam-class
bptry	bptry
bpvalidate	bpvalidate
bpvec	bpvec
bpvec,ANY,BiocParallelParam-method	bpvec
bpvec,ANY,list-method	bpvec
bpvec,ANY,missing-method	bpvec
bpvectorize	bpvectorize
bpvectorize,ANY,ANY-method	bpvectorize
bpvectorize,ANY,missing-method	bpvectorize
bpworkers	BiocParallelParam-class
bpworkers,BatchJobsParam-method	BatchJobsParam-class
bpworkers,BiocParallelParam-method	BiocParallelParam-class
bpworkers,DoparParam-method	DoparParam-class
bpworkers,missing-method	BiocParallelParam-class
bpworkers,SerialParam-method	SerialParam-class
bpworkers,SnowParam-method	SnowParam-class
bpworkers<-	BiocParallelParam-class
bpworkers<-,MulticoreParam,numeric-method	MulticoreParam-class
bpworkers<-,SnowParam,character-method	SnowParam-class
bpworkers<-,SnowParam,numeric-method	SnowParam-class
coerce,SOCKcluster,DoparParam-method	DoparParam-class
coerce,SOCKcluster,SnowParam-method	SnowParam-class
coerce,spawnedMPIcluster,SnowParam-method	SnowParam-class
DoparParam	DoparParam-class
DoparParam-class	DoparParam-class
ipcid	ipcmutex
ipclock	ipcmutex
ipclocked	ipcmutex
ipcremove	ipcmutex
ipcreset	ipcmutex
ipctrylock	ipcmutex
ipcunlock	ipcmutex
ipcvalue	ipcmutex
ipcyield	ipcmutex
MulticoreParam	MulticoreParam-class
MulticoreParam-class	MulticoreParam-class
multicoreWorkers	MulticoreParam-class
print.remote_error	BiocParallelParam-class
register	register
registered	register
SerialParam	SerialParam-class
SerialParam-class	SerialParam-class
show,BatchJobsParam-method	BatchJobsParam-class
show,BiocParallel-method	BiocParallelParam-class
show,DoparParam-method	DoparParam-class
show,MulticoreParam-method	MulticoreParam-class
show,SnowParam-method	SnowParam-class
SnowParam	SnowParam-class
SnowParam-class	SnowParam-class
snowWorkers	SnowParam-class