/usr/lib/R/site-library/biovizBase/INDEX is in r-bioc-biovizbase 1.26.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 | CRC CRC
GCcontent GC content computation for BSgenome
addStepping Adding disjoint levels to a GenomicRanges
object
biovizBase-package biovizBase is a package which provides
utilities and color scheme...
colorBlindSafePal Color blind safe palette generator
containLetters Checking if string contains letters or not
crc1.GeRL crc1.GeRL
crunch Fetching GRanges from various data source
darned_hg19_subset500 Subset of RNA editing sites in hg19...
estimateCoverage Estimation of Coverage
flatGrl Transform GRangesList to GRanges
genesymbol Gene symbols with position...
getBioColor Color scheme getter for biological data
getFormalNames Get formals from functions
getGaps get gaps for a stepping transformed GRanges
object
getIdeoGR Get ideogram information
getIdeogram Get ideogram.
getScale Get scale information from a GRanges
getXScale get x scale breaks and labels
getYLab parse x and y label information from a specific
object
hg19Ideogram Hg19 ideogram without cytoband information...
hg19IdeogramCyto Hg19 ideogram with cytoband information...
ideo ideogram without cytoband information
ideoCyto ideogram with cytoband information
isIdeogram Ideogram checking
isMatchedWithModel Utils for Splicing Summary
isSimpleIdeogram Simple ideogram checking
maxGap Estimated max gaps
mold mold data into data.frame
parseArgsForAes Utils for parsing (un)evaluated arguments
pileupAsGRanges Summarize reads for certain region
pileupGRangesAsVariantTable
Mismatch summary
plotColorLegend Show colors
showColor Show colors
shrinkageFun Shrinkage function
splitByFacets split a GRanges by formula
strip_formula_dots strip dots around a formula variables
subsetArgsByFormals Subset list of arguments by functions
transformGRangesForEvenSpace
Transform GRanges with New Coordinates
transformToGenome Transform GRanges to different coordinates and
layout
|