/usr/lib/R/site-library/DNAcopy/INDEX is in r-bioc-dnacopy 1.52.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | CNA Create 'Copy Number Array' data object
DNAcopy Results of segmenting a CNA data object
coriell Array CGH data set of Coriell cell lines
cytoBand Cytogenic band data
exon.segment Binary segmentation of exon data.
getbdry Sequential stopping boundary
glFrequency Additional summary measured for the segments
plot.DNAcopy Plot the data and results from segment of a CNA
object
plotSample Plot the data and results from segmentation for
a single sample
segment Genome Segmentation Program
segments.p p-values for the change-points
segments.summary Additional summary measured for the segments
smooth.CNA Smooth a 'Copy Number Array' data object
subset.CNA Subset a 'Copy Number Array' data object
subset.DNAcopy Subset a DNAcopy data object
zoomIntoRegion Zoomed in view of genomic region
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