This file is indexed.

/usr/lib/R/site-library/graph/GXL/gxl-1.0.1.dtd is in r-bioc-graph 1.56.0-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
<!-- GXL (1.0.1) 
     Document Type Definition
     (April 25, 2002) 
  
copyright by 

       Andy Schuerr 
         Institute for Software Technology 
         University of the German Federal Armed Forces Munich 
         85577 Neubiberg, Germany 
         Andy.Schuerr@unibw-muenchen.de 

       Susan Elliott Sim 
         Department of Computer Science 
         University of Toronto 
         Toronto M5S 3G4, Canada 
         simsuz@cs.utoronto.ca 

       Ric Holt 
         Department of Computer Science 
         University of Waterloo 
         Waterloo N2L 3G1, Canada 
         holt@plg.uwaterloo.ca 

       Andreas Winter 
         Institute for Software Technology 
         University of Koblenz-Landau 
         Rheinau 1, D-56075 Koblenz, Germany 
         winter@uni-koblenz.de
-->
<!-- Extensions -->
<!ENTITY % gxl-extension "">
<!ENTITY % graph-extension "">
<!ENTITY % node-extension "">
<!ENTITY % edge-extension "">
<!ENTITY % rel-extension "">
<!ENTITY % value-extension "">
<!ENTITY % relend-extension "">
<!ENTITY % gxl-attr-extension "">
<!ENTITY % graph-attr-extension "">
<!ENTITY % node-attr-extension "">
<!ENTITY % edge-attr-extension "">
<!ENTITY % rel-attr-extension "">
<!ENTITY % relend-attr-extension "">
<!-- Attribute values -->
<!ENTITY % val " 
           locator | 
           bool    | 
           int     | 
           float   | 
           string  | 
           enum    | 
           seq     | 
           set     | 
           bag     | 
           tup 
           %value-extension;">
<!-- gxl -->
<!ELEMENT gxl (graph* %gxl-extension;) >
<!ATTLIST gxl
	xmlns:xlink CDATA #FIXED "http://www.w3.org/1999/xlink"
	%gxl-attr-extension; 
>
<!-- type -->
<!ELEMENT type EMPTY>
<!ATTLIST type
	xlink:type (simple) #FIXED "simple"
	xlink:href CDATA #REQUIRED
>
<!-- graph -->
<!ELEMENT graph (type? , attr* , ( node | edge | rel )* %graph-extension;) >
<!ATTLIST graph
	id ID #REQUIRED
	role NMTOKEN #IMPLIED
	edgeids (true | false) "false"
	hypergraph (true | false) "false"
	edgemode (directed | undirected | defaultdirected | defaultundirected) "directed"
	%graph-attr-extension; 
>
<!-- node -->
<!ELEMENT node (type? , attr*, graph* %node-extension;) >
<!ATTLIST node
	id ID #REQUIRED
	%node-attr-extension; 
>
<!-- edge -->
<!ELEMENT edge (type?, attr*, graph* %edge-extension;) >
<!ATTLIST edge
	id ID #IMPLIED
	from IDREF #REQUIRED
	to IDREF #REQUIRED
	fromorder CDATA #IMPLIED
	toorder CDATA #IMPLIED
	isdirected (true | false) #IMPLIED
	%edge-attr-extension; 
>
<!-- rel -->
<!ELEMENT rel (type? , attr*, graph*, relend* %rel-extension;) >
<!ATTLIST rel
	id ID #IMPLIED
	isdirected (true | false) #IMPLIED
	%rel-attr-extension; 
>
<!-- relend -->
<!ELEMENT relend (attr* %relend-extension;) >
<!ATTLIST relend
	target IDREF #REQUIRED
	role NMTOKEN #IMPLIED
	direction (in | out | none) #IMPLIED
	startorder CDATA #IMPLIED
	endorder CDATA #IMPLIED
	%relend-attr-extension; 
>
<!-- attr -->
<!ELEMENT attr (type?, attr*, (%val;))>
<!ATTLIST attr
	id ID #IMPLIED
	name NMTOKEN #REQUIRED
	kind NMTOKEN #IMPLIED
>
<!-- locator -->
<!ELEMENT locator EMPTY>
<!ATTLIST locator
	xlink:type (simple) #FIXED "simple"
	xlink:href CDATA #REQUIRED
>
<!-- atomic values -->
<!ELEMENT bool (#PCDATA)>
<!ELEMENT int (#PCDATA)>
<!ELEMENT float (#PCDATA)>
<!ELEMENT string (#PCDATA)>
<!-- enumeration value -->
<!ELEMENT enum (#PCDATA)>
<!-- composite values -->
<!ELEMENT seq (%val;)*>
<!ELEMENT set (%val;)*>
<!ELEMENT bag (%val;)*>
<!ELEMENT tup (%val;)*>