/usr/lib/R/site-library/graph/help/AnIndex is in r-bioc-graph 1.56.0-1.
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acc,clusterGraph,character-method acc-methods
acc,clusterGraph-method acc-methods
acc,graph,character-method acc-methods
acc,graph-method acc-methods
acc-methods acc-methods
addEdge addEdge
addEdge,character,character,graphAM,missing-method graphAM-class
addEdge,character,character,graphBAM,missing-method graphBAM-class
addEdge,character,character,graphBAM,numeric-method graphBAM-class
addEdge,character,character,graphNEL,missing-method graphNEL-class
addEdge,character,character,graphNEL,numeric-method graphNEL-class
addNode addNode
addNode,character,distGraph,list-method addNode
addNode,character,graphAM,missing-method graphAM-class
addNode,character,graphBAM,missing-method addNode
addNode,character,graphNEL,list-method addNode
addNode,character,graphNEL,missing-method addNode
addNode,character,graphNEL-method graphNEL-class
adj adj-methods
adj,clusterGraph,ANY-method clusterGraph-class
adj,distGraph,ANY-method distGraph-class
adj,graphBAM,character-method graphBAM-class
adj,graphNEL,ANY-method graphNEL-class
adj-methods adj-methods
adjacencyMatrix adjacencyMatrix
adjacencyMatrix,graphBAM-method adjacencyMatrix
aM2bpG matrix2Graph
apopAttrs apoptosisGraph
apopGraph apoptosisGraph
apopLocusLink apoptosisGraph
attrData-class attrData-class
attrDataItem attrDataItem-methods
attrDataItem,attrData,character,character-method attrData-class
attrDataItem,attrData,character,missing-method attrData-class
attrDataItem-methods attrDataItem-methods
attrDataItem<- attrDataItem-methods
attrDataItem<-,attrData,character,character-method attrData-class
attrDataItem<--methods attrDataItem-methods
attrDefaults attrDefaults-methods
attrDefaults,attrData,character-method attrData-class
attrDefaults,attrData,missing-method attrData-class
attrDefaults-methods attrDefaults-methods
attrDefaults<- attrDefaults-methods
attrDefaults<-,attrData,character,ANY-method attrData-class
attrDefaults<-,attrData,missing,list-method attrData-class
attrDefaults<--methods attrDefaults-methods
aveNumEdges aveNumEdges
biocRepos biocRepos
boundary boundary
buildRepDepGraph defunct
calcProb calcProb
calcSumProb calcSumProb
clearNode clearNode
clearNode,character,graphAM-method graphAM-class
clearNode,character,graphBAM-method graphBAM-class
clearNode,character,graphNEL-method graphNEL-class
clusterGraph-class clusterGraph-class
clusteringCoefficient clusteringCoefficient-methods
clusteringCoefficient,graph clusteringCoefficient-methods
clusteringCoefficient,graph-method clusteringCoefficient-methods
coerce graphNEL-class
coerce,clusterGraph,matrix-method clusterGraph-class
coerce,graphAM,graphBAM-method graphAM-class
coerce,graphAM,graphNEL-method graphAM-class
coerce,graphAM,matrix-method graphAM-class
coerce,graphBAM,graphAM-method graphBAM-class
coerce,graphBAM,graphNEL-method graphBAM-class
coerce,graphBAM,matrix-method graphBAM-class
coerce,graphNEL,generalGraph-method graphNEL-class
coerce,graphNEL,graphAM-method graphNEL-class
coerce,graphNEL,graphBAM-method graphNEL-class
coerce,graphNEL,matrix-method matrix2Graph
coerce,matrix,graphAM-method graphAM-class
coerce,matrix,graphNEL-method matrix2Graph
combineNodes combineNodes
combineNodes,character,graphNEL,character-method combineNodes
complement graph-class
complement,graph-method graph-class
connComp graph-class
connComp,clusterGraph-method clusterGraph-class
connComp,graph-method graph-class
degree graph-class
degree,graph,ANY-method graph-class
degree,graph,missing-method graph-class
degree,MultiGraph,missing-method graph-class
DFS DFS
DFS,graph,character-method DFS
dfs,graph-method graph-class
Dist distGraph-class
Dist,distGraph-method distGraph-class
distGraph-class distGraph-class
dumpGXL fromGXL-methods
dumpGXL,connection-method fromGXL-methods
dumpGXL-methods fromGXL-methods
duplicatedEdges duplicatedEdges
edgeData edgeData-methods
edgeData,graph,character,character,character-method graph-class
edgeData,graph,character,character,missing-method graph-class
edgeData,graph,character,missing,character-method graph-class
edgeData,graph,missing,character,character-method graph-class
edgeData,graph,missing,missing,character-method graph-class
edgeData,graph,missing,missing,missing-method graph-class
edgeData,graphBAM,character,character,character-method graphBAM-class
edgeData,graphBAM,character,missing,character-method graphBAM-class
edgeData,graphBAM,missing,character,character-method graphBAM-class
edgeData,graphBAM,missing,missing,character-method graphBAM-class
edgeData,graphBAM,missing,missing,missing-method graphBAM-class
edgeData-methods edgeData-methods
edgeData<- edgeData-methods
edgeData<-,graph,character,character,character,ANY-method graph-class
edgeData<-,graph,character,character,character-method graph-class
edgeData<-,graph,character,missing,character,ANY-method graph-class
edgeData<-,graph,character,missing,character-method graph-class
edgeData<-,graph,missing,character,character,ANY-method graph-class
edgeData<-,graph,missing,character,character-method graph-class
edgeData<-,graphBAM,character,character,character,ANY-method graphBAM-class
edgeData<-,graphBAM,character,character,character-method graphBAM-class
edgeData<-,graphBAM,character,missing,character,ANY-method graphBAM-class
edgeData<-,graphBAM,character,missing,character-method graphBAM-class
edgeData<-,graphBAM,missing,character,character,ANY-method graphBAM-class
edgeData<-,graphBAM,missing,character,character-method graphBAM-class
edgeData<-,graphBAM,missing,missing,character,ANY-method graphBAM-class
edgeData<-,graphBAM,missing,missing,character-method graphBAM-class
edgeData<--methods edgeData-methods
edgeDataDefaults edgeDataDefaults-methods
edgeDataDefaults,graph,character-method graph-class
edgeDataDefaults,graph,missing-method graph-class
edgeDataDefaults-methods edgeDataDefaults-methods
edgeDataDefaults<- edgeDataDefaults-methods
edgeDataDefaults<-,graph,character,ANY-method graph-class
edgeDataDefaults<-,graph,character-method graph-class
edgeDataDefaults<-,graph,missing,list-method graph-class
edgeDataDefaults<-,graphBAM,character,ANY-method graphBAM-class
edgeDataDefaults<-,graphBAM,missing,list-method graphBAM-class
edgeDataDefaults<--methods edgeDataDefaults-methods
edgeL graphNEL-class
edgeL,clusterGraph-method clusterGraph-class
edgeL,distGraph-method distGraph-class
edgeL,graph-method graph-class
edgeL,graphNEL-method graphNEL-class
edgeMatrix edgeMatrix
edgeMatrix,clusterGraph-method edgeMatrix
edgeMatrix,distGraph-method edgeMatrix
edgeMatrix,graphAM-method edgeMatrix
edgeMatrix,graphBAM-method edgeMatrix
edgeMatrix,graphNEL-method edgeMatrix
edgemode graph-class
edgemode,edgeSet-method multigraph
edgemode,graph-method graph-class
edgemode<- graph-class
edgemode<-,graph,character-method graph-class
edgemode<-,graphBAM,character-method graphBAM-class
edgeNames graph-class
edgeNames,graph-method graph-class
edgeNames,MultiGraph-method MultiGraph-class
edgeRenderInfo renderInfo-class
edgeRenderInfo<- renderInfo-class
edges graphNEL-class
edges,clusterGraph,character-method clusterGraph-class
edges,clusterGraph,missing-method clusterGraph-class
edges,distGraph,character-method distGraph-class
edges,distGraph,missing-method distGraph-class
edges,edgeSetAM,character-method multigraph
edges,edgeSetNEL,character-method multigraph
edges,graphAM,character-method graphAM-class
edges,graphAM,missing-method graphAM-class
edges,graphBAM,character-method graphBAM-class
edges,graphBAM,missing-method graphBAM-class
edges,graphNEL,character-method graphNEL-class
edges,graphNEL,missing-method graphNEL-class
edges,MultiGraph,character-method MultiGraph-class
edges,multiGraph,character-method multigraph
edges,MultiGraph,missing-method MultiGraph-class
edges,multiGraph,missing-method multigraph
edgeSet-class multigraph
edgeSetAM-class multigraph
edgeSetIntersect0 MultiGraph-class
edgeSetNEL-class multigraph
edgeSets MultiGraph-class
edgeSets,MultiGraph-method MultiGraph-class
edgeSetUnion0 MultiGraph-class
edgeWeights edgeWeights
edgeWeights,clusterGraph,ANY-method clusterGraph-class
edgeWeights,clusterGraph-method clusterGraph-class
edgeWeights,distGraph,ANY-method distGraph-class
edgeWeights,distGraph-method distGraph-class
edgeWeights,graph,character-method graph-class
edgeWeights,graph,missing-method graph-class
edgeWeights,graph,numeric-method graph-class
edgeWeights,graphBAM,character-method graphBAM-class
edgeWeights,graphBAM,missing-method graphBAM-class
edgeWeights,graphBAM,numeric-method graphBAM-class
edgeWeights,graphBAM-method graphBAM-class
edgeWeights,graphNEL-method graphNEL-class
esetsFemale edgeSets
esetsMale edgeSets
eweights MultiGraph-class
eWV edgeMatrix
extractFromTo MultiGraph-class
extractFromTo,graphBAM-method graphBAM-class
extractFromTo,MultiGraph-method MultiGraph-class
extractGraphAM MultiGraph-class
extractGraphBAM MultiGraph-class
fromGXL fromGXL-methods
fromGXL,connection-method fromGXL-methods
fromGXL-methods fromGXL-methods
ftM2adjM matrix2Graph
ftM2graphNEL matrix2Graph
ftM2int standardLabeling
graph-class graph-class
graph-defunct defunct
graph.par settings
graph.par.get settings
graph2SparseM graph2SparseM
graphAM graphAM-class
graphAM-class graphAM-class
graphBAM graphBAM-class
graphBAM-class graphBAM-class
graphBase-class graph-class
graphExamples graphExamples
graphIntersect graphBAM-class
graphIntersect,graphBAM,graphBAM-method graphBAM-class
graphIntersect,MultiGraph,MultiGraph-method MultiGraph-class
graphNEL graphNEL-class
graphNEL-class graphNEL-class
graphRenderInfo renderInfo-class
graphRenderInfo<- renderInfo-class
graphUnion graphBAM-class
graphUnion,graphBAM,graphBAM-method graphBAM-class
graphUnion,MultiGraph,MultiGraph-method MultiGraph-class
GXL fromGXL-methods
gxlTreeNEL fromGXL-methods
IMCA IMCA
IMCAAttrs IMCA
IMCAGraph IMCA
inEdges inEdges
inEdges,character,graphAM-method graphAM-class
inEdges,character,graphBAM-method graphBAM-class
inEdges,character,graphNEL-method graphNEL-class
inEdges,graphAM,missing-method graphAM-class
inEdges,graphNEL,missing-method graphNEL-class
inEdges,missing,graphAM-method graphAM-class
inEdges,missing,graphNEL-method graphNEL-class
initialize graphNEL-class
initialize,attrData-method attrData-class
initialize,distGraph-method distGraph-class
initialize,graphAM-method graphAM-class
initialize,graphBAM-method graphBAM-class
initialize,graphNEL-method graphNEL-class
int2ftM standardLabeling
integrinMediatedCellAdhesion IMCA
intersection graph-class
intersection,graph,graph-method graph-class
intersection2 graph-class
intersection2,graph,graph-method graph-class
isAdjacent isAdjacent-methods
isAdjacent,graph,character,character-method graph-class
isAdjacent,graphAM,character,character-method graphAM-class
isAdjacent,graphBAM,character,character-method graphBAM-class
isAdjacent-methods isAdjacent-methods
isConnected graph-class
isConnected,graph-method graph-class
isDirected isDirected-methods
isDirected,DiEdgeSet-method MultiGraph-class
isDirected,edgeSet-method multigraph
isDirected,graph-method graph-class
isDirected,MultiGraph-method MultiGraph-class
isDirected,multiGraph-method multigraph
isDirected,UEdgeSet-method MultiGraph-class
isDirected-methods isDirected-methods
join graph-class
join,graph,graph-method graph-class
leaves leaves
leaves,graph-method leaves
listEdges listEdges
MAPKsig MAPKsig
mgEdgeData MultiGraph-class
mgEdgeData,MultiGraph,character,character,character,character-method MultiGraph-class
mgEdgeData,MultiGraph,character,character,missing,character-method MultiGraph-class
mgEdgeData,MultiGraph,character,missing,character,character-method MultiGraph-class
mgEdgeData,MultiGraph,character,missing,missing,character-method MultiGraph-class
mgEdgeData<- MultiGraph-class
mgEdgeData<-,MultiGraph,character,character,character,character-method MultiGraph-class
mgEdgeData<-,MultiGraph,character,character,missing,character-method MultiGraph-class
mgEdgeData<-,MultiGraph,character,missing,character,character-method MultiGraph-class
mgEdgeData<-,MultiGraph,character,missing,missing,character-method MultiGraph-class
mgEdgeDataDefaults MultiGraph-class
mgEdgeDataDefaults,MultiGraph,character,character-method MultiGraph-class
mgEdgeDataDefaults,MultiGraph,character,missing-method MultiGraph-class
mgEdgeDataDefaults<- MultiGraph-class
mgEdgeDataDefaults<-,MultiGraph,character,character,ANY-method MultiGraph-class
mgEdgeDataDefaults<-,MultiGraph,character,missing,list-method MultiGraph-class
mostEdges mostEdges
MultiGraph MultiGraph-class
MultiGraph-class MultiGraph-class
multiGraph-class multigraph
names,attrData-method attrData-class
names<-,attrData,character-method attrData-class
NELhandler fromGXL-methods
nodeData nodeData-methods
nodeData,graph,character,character-method graph-class
nodeData,graph,character,missing-method graph-class
nodeData,graph,missing,character-method graph-class
nodeData,graph,missing,missing-method graph-class
nodeData,graphBAM,character,character-method graphBAM-class
nodeData,graphBAM,character,missing-method graphBAM-class
nodeData,graphBAM,missing,character-method graphBAM-class
nodeData,graphBAM,missing,missing-method graphBAM-class
nodeData,MultiGraph,character,character-method MultiGraph-class
nodeData,MultiGraph,character,missing-method MultiGraph-class
nodeData,MultiGraph,missing,character-method MultiGraph-class
nodeData,MultiGraph,missing,missing-method MultiGraph-class
nodeData-methods nodeData-methods
nodeData<- nodeData-methods
nodeData<-,graph,character,character-method graph-class
nodeData<-,graph,missing,character-method graph-class
nodeData<-,graphBAM,character,character-method graphBAM-class
nodeData<-,graphBAM,missing,character-method graphBAM-class
nodeData<-,MultiGraph,character,character-method MultiGraph-class
nodeData<-,MultiGraph,missing,character-method MultiGraph-class
nodeData<--methods nodeData-methods
nodeDataDefaults nodeDataDefaults-methods
nodeDataDefaults,graph,character-method graph-class
nodeDataDefaults,graph,missing-method graph-class
nodeDataDefaults,graphBAM,character-method graphBAM-class
nodeDataDefaults,graphBAM,missing-method graphBAM-class
nodeDataDefaults,MultiGraph,character-method MultiGraph-class
nodeDataDefaults,MultiGraph,missing-method MultiGraph-class
nodeDataDefaults-methods nodeDataDefaults-methods
nodeDataDefaults<- nodeDataDefaults-methods
nodeDataDefaults<-,graph,character,ANY-method graph-class
nodeDataDefaults<-,graph,character-method graph-class
nodeDataDefaults<-,graph,missing,list-method graph-class
nodeDataDefaults<-,graphBAM,character,ANY-method graphBAM-class
nodeDataDefaults<-,graphBAM,missing,ANY-method graphBAM-class
nodeDataDefaults<-,graphBAM,missing,list-method graphBAM-class
nodeDataDefaults<-,MultiGraph,character,ANY-method MultiGraph-class
nodeDataDefaults<-,MultiGraph,missing,list-method MultiGraph-class
nodeDataDefaults<--methods nodeDataDefaults-methods
nodeRenderInfo renderInfo-class
nodeRenderInfo<- renderInfo-class
nodes graphNEL-class
nodes,clusterGraph-method clusterGraph-class
nodes,distGraph-method distGraph-class
nodes,edgeSetAM-method multigraph
nodes,graph-method graph-class
nodes,graphAM-method graphAM-class
nodes,graphBAM-method graphBAM-class
nodes,graphNEL-method graphNEL-class
nodes,MultiGraph-method MultiGraph-class
nodes,multiGraph-method multigraph
nodes<- graphNEL-class
nodes<-,clusterGraph,character-method clusterGraph-class
nodes<-,graph,character-method graph-class
nodes<-,graphAM,character-method graphAM-class
nodes<-,graphBAM,character-method graphBAM-class
nodes<-,graphNEL,character-method graphNEL-class
nullgraphID internal
numEdges graph-class
numEdges,edgeSetAM-method multigraph
numEdges,graph-method graph-class
numEdges,graphAM-method graphAM-class
numEdges,graphBAM-method graphBAM-class
numEdges,MGEdgeSet-method MultiGraph-class
numEdges,MultiGraph-method MultiGraph-class
numEdges,multiGraph-method multigraph
numNodes graph-class
numNodes,clusterGraph-method clusterGraph-class
numNodes,distGraph-method distGraph-class
numNodes,graph-method graph-class
numNodes,graphAM-method graphAM-class
numNodes,graphBAM-method graphBAM-class
numNodes,graphNEL-method graphNEL-class
numNodes,MultiGraph-method MultiGraph-class
numNodes,multiGraph-method multigraph
numNoEdges numNoEdges
pancrCaIni pancrCaIni
parRenderInfo renderInfo-class
parRenderInfo<- renderInfo-class
pathWeights edgeMatrix
pkgInstOrder defunct
plot,graph,ANY-method graph-class
randomEGraph randomEGraph
randomGraph randomGraph
randomNodeGraph randomNodeGraph
removeAttrDataItem<- attrData-class
removeAttrDataItem<-,attrData,character,NULL-method attrData-class
removeEdge removeEdge
removeEdge,character,character,graphAM-method graphAM-class
removeEdge,character,character,graphBAM-method graphBAM-class
removeEdge,character,character,graphNEL-method graphNEL-class
removeEdgesByWeight graphBAM-class
removeEdgesByWeight,graphBAM-method graphBAM-class
removeNode removeNode
removeNode,character,graphAM-method graphAM-class
removeNode,character,graphBAM-method graphBAM-class
removeNode,character,graphNEL-method graphNEL-class
renderInfo-class renderInfo-class
reverseEdgeDirections reverseEdgeDirections
show,clusterGraph-method clusterGraph-class
show,distGraph-method distGraph-class
show,edgeSet-method multigraph
show,graph-method graph-class
show,graphBAM-method graphBAM-class
show,MultiGraph-method MultiGraph-class
show,multiGraph-method multigraph
simpleEdge-class simpleEdge-class
sparseM2Graph graph2SparseM
subGraph subGraph
subGraph,character,clusterGraph-method subGraph
subGraph,character,distGraph-method subGraph
subGraph,character,graphBAM-method subGraph
subGraph,character,graphNEL-method subGraph
subGraph,character,MultiGraph-method subGraph
subsetEdgeSets MultiGraph-class
threshold distGraph-class
threshold,distGraph-method distGraph-class
toDotR toDotR-methods
toDotR,graphNEL,character,list,list-method toDotR-methods
toDotR,graphNEL,character,missing,list-method toDotR-methods
toDotR,graphNEL,character,missing,missing-method toDotR-methods
toDotR,graphNEL,missing,character,missing-method toDotR-methods
toDotR,graphNEL,missing,list,list-method toDotR-methods
toDotR,graphNEL,missing,list,missing-method toDotR-methods
toDotR,graphNEL,missing,missing,list-method toDotR-methods
toDotR,graphNEL,missing,missing,missing-method toDotR-methods
toDotWithRI toDotWithRI
toGXL fromGXL-methods
toGXL,graphNEL-method graphNEL-class
toGXL-methods fromGXL-methods
ugraph ugraph
ugraph,DiEdgeSet-method MultiGraph-class
ugraph,graph-method ugraph
ugraph,graphBAM-method graphBAM-class
ugraph,MultiGraph-method MultiGraph-class
ugraph,UEdgeSet-method MultiGraph-class
ugraphOld defunct
union,graph,graph-method graph-class
updateGraph graph-class
updateGraph,graph-method graph-class
validateGXL fromGXL-methods
validateGXL,connection-method fromGXL-methods
validGraph validGraph
write.tlp write.tlp
[.dist distGraph-class
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