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<head><title>R: Resampling-based multiple hypothesis testing</title>
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<h1> Resampling-based multiple hypothesis testing
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</div><h2>Documentation for package ‘multtest’ version 2.34.0</h2>
<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
</ul>
<h2>Help Pages</h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="Hsets.html">ABH.h0</a></td>
<td>Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">as.list</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">as.list-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">as.list-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="Hsets.html">dens.est</a></td>
<td>Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="EBMTP.html">EBMTP</a></td>
<td>A function to perform empirical Bayes resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="EBMTP-class.html">EBMTP-class</a></td>
<td>Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output</td></tr>
<tr><td style="width: 25%;"><a href="EBMTP-class.html">EBMTP-method</a></td>
<td>Class "EBMTP", classes and methods for empirical Bayes multiple testing procedure output</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">EBMTP-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">ebmtp2mtp</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">ebmtp2mtp-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">ebmtp2mtp-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">EBupdate</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">EBupdate-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">EBupdate-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="Hsets.html">G.VS</a></td>
<td>Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="golub.html">golub</a></td>
<td>Gene expression dataset from Golub et al. (1999)</td></tr>
<tr><td style="width: 25%;"><a href="golub.html">golub.cl</a></td>
<td>Gene expression dataset from Golub et al. (1999)</td></tr>
<tr><td style="width: 25%;"><a href="golub.html">golub.gnames</a></td>
<td>Gene expression dataset from Golub et al. (1999)</td></tr>
<tr><td style="width: 25%;"><a href="Hsets.html">Hsets</a></td>
<td>Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="mt.maxT.html">mt.maxT</a></td>
<td>Step-down maxT and minP multiple testing procedures</td></tr>
<tr><td style="width: 25%;"><a href="mt.maxT.html">mt.minP</a></td>
<td>Step-down maxT and minP multiple testing procedures</td></tr>
<tr><td style="width: 25%;"><a href="mt.plot.html">mt.plot</a></td>
<td>Plotting results from multiple testing procedures</td></tr>
<tr><td style="width: 25%;"><a href="mt.rawp2adjp.html">mt.rawp2adjp</a></td>
<td>Adjusted p-values for simple multiple testing procedures</td></tr>
<tr><td style="width: 25%;"><a href="mt.reject.html">mt.reject</a></td>
<td>Identity and number of rejected hypotheses</td></tr>
<tr><td style="width: 25%;"><a href="mt.sample.teststat.html">mt.sample.label</a></td>
<td>Permutation distribution of test statistics and raw (unadjusted) p-values</td></tr>
<tr><td style="width: 25%;"><a href="mt.sample.teststat.html">mt.sample.rawp</a></td>
<td>Permutation distribution of test statistics and raw (unadjusted) p-values</td></tr>
<tr><td style="width: 25%;"><a href="mt.sample.teststat.html">mt.sample.teststat</a></td>
<td>Permutation distribution of test statistics and raw (unadjusted) p-values</td></tr>
<tr><td style="width: 25%;"><a href="mt.teststat.html">mt.teststat</a></td>
<td>Computing test statistics for each row of a data frame</td></tr>
<tr><td style="width: 25%;"><a href="mt.teststat.html">mt.teststat.num.denum</a></td>
<td>Computing test statistics for each row of a data frame</td></tr>
<tr><td style="width: 25%;"><a href="MTP.html">MTP</a></td>
<td>A function to perform resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="MTP-class.html">MTP-class</a></td>
<td>Class "MTP", classes and methods for multiple testing procedure output</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">MTP-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">mtp2ebmtp</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">mtp2ebmtp-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">mtp2ebmtp-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">plot</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">plot-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">plot-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">print-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">print-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">print.MTP</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">summary</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">summary-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">summary-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">update</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">update-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">update-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="Hsets.html">VScount</a></td>
<td>Functions for generating guessed sets of true null hypotheses in empirical Bayes resampling-based multiple hypothesis testing</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">[-method</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
<tr><td style="width: 25%;"><a href="MTP-methods.html">[-methods</a></td>
<td>Methods for MTP and EBMTP objects in Package 'multtest'</td></tr>
</table>
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