r-bioc-rsamtools 1.30.0-1 / usr / lib / R / site-library / Rsamtools / extdata / pileup.txt

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6	14074	G	T	4	4	0	1	T$	%
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6	76970	G	C	0	0	7	2	c,	%0
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6	120717	C	T	114	114	54	29	ttT$t$ttTTTTTTtTtttTtTTttttTtTt	AA(+=::5=>>A=?C@?A=:2?@;78?>:
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6	124474	T	C	97	116	36	37	CCC$ccccG.CccGCcgCcccCcccccCCCCccCCCcc	).)022-&&.4#+&(&9.5331/1/3;82=$,*+94-
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6	125248	A	G	120	154	47	60	gGggGGGG,Gggg.gggGgGGTggGg.G,gGgG.GGg,gtGgGgGGgGgGGggGGGgg^<G^~G	>(=>7883<-<<=9;132648$=82?<3?=0<1;47><1*6=2257<4411.914'**++
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6	125710	C	M	18	18	58	18	AaA$A.,,.,..,.,,,.,	=?6=;69<)@=>;92036
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6	125959	A	C	94	135	56	38	cCCCcT$cccCCCCCTCcCcCCCccCCcCCCCccc^~C^~C^~c^Jc	<&1+=%;864.3-9(;:-/==92>>-1.3;=9;8+++3
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6	134836	T	Y	97	97	56	29	c,cC.,$C,.,c,,cCc,..Cc...a,,CC	<4;=9=$86>8=?:9;1@A?7?;?&=/=:
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6	135248	A	G	114	138	55	38	Gg$g$GGgGggGGgggggggggGGgGG.gggGggGGGGg^~g	8++-0;4.=*);<<7::;%=47=(1/)&82;=7644,&
6	135492	C	T	106	138	56	38	T$TTtTtTTTttTTTTtTTtttTttTTTttaTTTttTtt	(ABAA:BBA1;>CC@>@B>5?A8;@?@?;%@>>17+;,
6	136172	C	G	150	172	54	57	gG$Gg$gGgGTgggGGGTGGGGTGGGGggGGggGGGggGGgGGGGggGgaggggG^6G^+G^_G^~g	?.@+<.@&$==@/1<%:>*,%%;<:>>;;9<:97:6:;4=<9;*&<5+2>:%7++&*
6	136263	G	C	129	162	57	46	cC$CcC$cCCCCCcCCCCCccCCccCCacccCCccCcCCcCccCccC^SC	3(*8)1$2?<>2>*==?135,2387(077>?1/=1;>7:6/;4.<+
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6	138203	T	G	156	175	53	50	GGGGG$ggGggGgggGgGCGgGGGGgggGgggGGggGGGGGGGgGgGg^QG^+g^lg	<<<<*???<?:=?A7?:188?>=7?>><?><>@;.;8><>::?:&8&+/'
6	138322	C	C	153	0	54	54	,,,..T,$..,.,.,.,,..T.,...,A.....,+2gt..,,..,..,,..,..,.,,^U.	556@/#<<-2+-:1,206(*;112<2)<;7'@2=(4,;55;;00;?-;=-9$/@
6	138322	*	*/+GT	150	150	54	54	*	+GT	53	1	0	0	0
6	138331	C	S	29	29	52	53	GG$g$GGGg.GGT..,G.g,TA,..,,..t..,.,,...,tt,,ttt..,,,.^~.^~.	/&+4(*".:1(;229);(&34>;//>."?<6?/0>><.76.3:$(==(0$<?=
6	138332	A	K	58	105	53	55	TTT$T$t$TTTTGGgTGtgTGgGGggGGgGGgGggGGGg,,gg,g,GGgggGGG^zt^~g^~G^~t	59)*+*6=(77=-5;<;9=30><48=67>75<546=5+;;0#?23-5:331.*+1
6	138355	A	R	56	56	53	92	T$T$..,.,$,..T,,,,,,,,T.,,,...g,.,,,..G...,,.,,,,g.,,.,.g,..g,.G,G,...,g.g.gG.,..gGGg.g,.G,g^~,^mg^~.	*%?9?,>8,;2?=<<<:(='3>?,&:0?B@:6,<9?5:=A77777'(<5</A?<%<<;%::+=9:=:(-?<=<;9(:9.>:9::":8,$$*=
6	138361	C	Y	161	161	54	89	..,..,.$,$,,...t,.a,,..TT..,tTtt,,,.,,.,.t,..t,.T,T,...gt.t.tT.,..gTTt.tg.T,t,t.,t.T.ttt,gT	)756*6)C53/(>850&7#<(@:0869>>?2().65%8?>356:19@6@'=<=(<<0?>9<3>=*??:=1,=>'*21=+7>@=51:/+=
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6	139090	C	Y	145	145	59	38	.Tt$t$...t,Tttt,T.,,ttTt..t,.,,,.,T,,,.^~t	==++=:;92A><>5@?/3?=C1?<81=155=0?3.1<,
6	139252	C	C	34	0	55	23	,.,,..,,+3ttt.,,.,+4tttt,.+4TTTT,,Tt.t.^Jt	97>=4:<1;*-</1=.8B*&,;)
6	139252	*	+TTTT/*	61	61	55	23	+TTTT	*	2	20	1	0	0
6	139470	C	Y	126	161	58	32	T,,t,tT.T.,tt,.t,.ttT,Ttta,.T,,^QT	A?:B9@5.<=>:3==:(:>>99>C?'>>?=9+
6	139624	A	R	41	41	47	38	..,gG.G,.g.,,,,Gg.,..,,.Ggggg..,,..gc^gg	;;>='/1<?<8><7;5<:?9>>-<5';$;><0:>?=&'
6	139688	G	R	52	52	51	35	,$.a.A$..,,,,a...A,,....A.,.aaaa,,..A	;6=>5(::;<=A?=@8=<*<9><5>18(477>;5,
6	140277	T	Y	110	110	57	32	C$C$c$C.CC,CCc.c..,,CcC,A.c.CC.C.,C	+++<388<;>2;473=<=3>A'>6A<====8;
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6	146976	*	+A/-A	63	293	54	33	+A	-A	3	4	26	1	18
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6	294343	T	W	198	198	58	113	.Ga.a,Aaa,,a$,$.Aa,A,,A,.,aA,,a.,.,,,.aaa.Aa.A,.,,a,.,a,A.AA,a,aaa,,,aaAAA.,aaa.,...a,,AaaaAAaaaa,a..aaa.,AAA.,^~A^~,^|,^+A	6"@1><*BB?>+?7.@>'?<*;:9A69@?9<5AA;*=@@;7@0::>;>09/;:80:5:8B<@B:=???>=<=?@>@+<=@1>>;<4<6>:9:02;@,<4>>%:;:89;*+=2+
6	295371	C	Y	56	56	58	82	,$T,t.,,$.,.,.,,.T...,,.t.,.,t,t,,at.T....T....,T,t,,,,Tt.t,t,,..,t...T,,.,..T.,,^~.^~.^~.	D;<?@>>@:*;@:62@?+7:;<=6<?8=7<=6,>91A?<>?=*??7@7<9=:;=;=<6<73=<-9<><);4=.?@"<)5>AA
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6	296156	C	Y	133	212	56	60	,,,Tt$.T,t,tt.,tt,Ttt..T,,..TtT,t.tt.tT,.t,TTT.gT,t,TTt.t,t.^~.	556C+)?79+;<01>>2B;<*)027<=@:=5=5<<:6:6<?20@@=+:3?,<>(:9/5<E
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6	298365	C	T	255	255	55	84	t$ttttTTtTTtttTttTtttTtTTttTTTTtttTtTTtttTttTTtttTTTtttTTtTTTTtTtTtTttTTtTttTtTtttt^ST^~t	+9<<>95/&>@.;=;;<A<0?4/A>=>@A@9;>@?AB1==>84@C4==<9A:2==94@@?C8<5B;<3<@B?@<:>79'>85+*
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6	300287	T	T	238	0	57	70	.,.,..,,,,,,$..,...+2GG......,..,.,,,,.,.,,,,,.,,,.,,,.,,,,,,,,,,,,,..,,^~.^~.^~,	;=;@>B<<AAA<@0=>9?==<9@><A@<AA@;<@?B>B=A<@3?:==9>AB>?>:>7<><=?=@>>:CE7
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6	300288	G	G	205	0	57	72	.$,.,..,,,,,.$.$,$.........,..,.,,,,.,.,,,,,.,,,.,,,.+5GGTGT,,,,,,,,,,,,,..,,..,^~T^~.^s,	>=:>/?;;>>??1><7:;:;4:80;<<<?<:08==;>=@==?3>;=?===<9=<>6<=9=?2=:>7=>8+=6
6	300288	*	*/+GGTGT	70	70	57	72	*	+GGTGT	71	1	0	0	0
6	300441	A	G	255	255	57	107	ggGGgGgGGggg$G$g$GGgggggGgGGGGGggGGggGTGggGGGGgGGGGGGGggGggGggGgGGgGgggGggggGGGgGGGgGGGgGgGGGGGGggGggggGGG^~G^~G^~G^{G	:>7,:2@2*>@+,+7+<=;@;2:(20.2>;02>4/94;=11228/566*777<5;=7<@8=80<4<<91;:?</56=353<485;19234-54><4;=9;/3/++++
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6	302046	*	*/*	230	0	57	95	*	+G	94	1	0	0	0
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6	303206	C	Y	154	154	58	86	TTGt,,T,T.$...,t.,.,,,t...,T,t,tTTTT,....t.TTTtTTT,TT.,t.t...,.,.tTt.tt....Tt,TT,,,t.T^~T	)8":?@5=;&$14<9.8699=8/.>:?:;)=/2>41:>/,A,$=.4%&7<8=<?;8;9*65;6312+9:;;05<79-.>5;%188+
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6	304070	*	-G/*	166	1166	57	52	-G	*	29	23	0	0	0
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6	304191	C	Y	101	101	57	59	t$.T,$,,$T,,,,.,t,tA.t,t,t,,,.,t,,,t,.,,T,.T,.,,.,,tt,,,a,,^+,^~,^oG	?<@A6B(2754<8;3?<?<3>59146>0A/,6=1=5.@3A?5?7/<5(*732&&.*(/'
6	304263	C	Y	56	121	58	61	,tTT,t$,$,,,t,tt,tt,T,t.t,,,tt,T,T,tt,,T,,,,t,.T..tgT,,,,,tt^~,^R,^tg	.<8$6+<22-@/><&?>2&25'@28/<@4;3,/@=6%02544630-;:?"<$/0.2)/+,$
6	304312	T	K	76	84	56	32	,,,.,,.a$.,,..,g,g.+1GgggggGggGGG^pg^+g^tG	6>;2;=/'&:3.(3&<&3%079;5;?776,,<
6	304312	*	+G/+G	79	156	56	32	+G	*	1	31	0	0	0
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6	305038	T	Y	182	182	57	112	C$cCc$.,CC,CcC.,.ccC,cC,c.C.cCcc,.,C.Cc..c,,,c.CCcc,,.cC..C.,.cc.Cc,,C.c,,,,ccccC.CC,...,,g..c.,C,,,,.,.CccC.c,C^~C^~a	*70E-=A?:@64?9>82;=3)<7<A@$=3'?>28==3;,644;(>>#70<9@7;@;>?@B52?7853>48=>?87/24=?<::?>>?9%=)7?>@=',.=<8:3,<A/5<+(
6	305165	G	G	75	0	56	48	.,,TT,,,.+1T..,,.+1T,,,.,A,,,.T...,,+1t,,+1t,,+1t,,,+1t,,.+1T,,.+1T.t^~,^~,^~.	;?;/A;=<;>*;=%9:<5=8>>;9)762/9=>?=:@?<(=&:79??1>
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