/usr/lib/R/site-library/rtracklayer/help/AnIndex is in r-bioc-rtracklayer 1.38.0-1build1.
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$,TrackDb-method TrackDb-class
$<-,TrackDb-method TrackDb-class
2BitFile TwoBitFile-class
2BitFile-class TwoBitFile-class
activeView activeView-methods
activeView,BrowserSession-method activeView-methods
activeView,UCSCView-method activeView-methods
activeView-methods activeView-methods
activeView<- activeView-methods
activeView<--methods activeView-methods
as.character,RTLFile-method RTLFile-class
asBED asBED
asBED,GAlignments-method asBED
asBED,GRangesList-method asBED
asGFF asGFF
asGFF,GRangesList-method asGFF
BasicTrackLine-class basicTrackLine-class
BED15File BEDFile-class
BED15File-class BEDFile-class
Bed15TrackLine-class Bed15TrackLine-class
BEDFile BEDFile-class
BEDFile-class BEDFile-class
BEDGraphFile BEDFile-class
BEDGraphFile-class BEDFile-class
BEDPEFile BEDFile-class
BEDPEFile-class BEDFile-class
BigWigFile BigWigFile
BigWigFile-class BigWigFile
BigWigFileList BigWigFile
BigWigFileList-class BigWigFile
BigWigSelection BigWigSelection-class
BigWigSelection-class BigWigSelection-class
blocks blocks-methods
blocks,GenomicRanges-method blocks-methods
blocks-methods blocks-methods
browseGenome browseGenome
browseGenome,GenomicRanges_OR_GenomicRangesList-method browseGenome
browseGenome,missing-method browseGenome
browserSession browserSession-methods
browserSession,BrowserView-method browserSession-methods
browserSession,character-method browserSession-methods
browserSession,missing-method browserSession-methods
browserSession,UCSCTableQuery-method UCSCTableQuery-class
BrowserSession-class browserSession-class
browserSession-methods browserSession-methods
browserSession<- UCSCTableQuery-class
browserSession<-,UCSCTableQuery,UCSCSession-method UCSCTableQuery-class
browserView browserView-methods
browserView,UCSCSession-method browserView-methods
BrowserView-class browserView-class
browserView-methods browserView-methods
BrowserViewList BrowserViewList-class
BrowserViewList-class BrowserViewList-class
browserViews browserViews-methods
browserViews,UCSCSession-method browserViews-methods
browserViews-methods browserViews-methods
BWFile BigWigFile
BWFile-class BigWigFile
Chain-class Chain-class
ChainBlock-class Chain-class
ChainFile Chain-class
ChainFile-class Chain-class
chrom GenomicData
chrom,GRanges-method GenomicData
chrom,RangesList-method RangesList-methods
chrom<- GenomicData
chrom<-,GRanges-method GenomicData
chrom<-,RangesList-method RangesList-methods
class:2BitFile TwoBitFile-class
class:BED15File BEDFile-class
class:BEDFile BEDFile-class
class:BEDGraphFile BEDFile-class
class:BigWigFile BigWigFile
class:BigWigFileList BigWigFile
class:BWFile BigWigFile
class:Chain Chain-class
class:ChainBlock Chain-class
class:ChainFile Chain-class
class:CompressedFile RTLFile-class
class:FastaFile FastaFile-class
class:GFF1File GFFFile-class
class:GFF2File GFFFile-class
class:GFF3File GFFFile-class
class:GFFFile GFFFile-class
class:GTFFile GFFFile-class
class:GVFFile GFFFile-class
class:Quickload Quickload-class
class:QuickloadGenome QuickloadGenome-class
class:RTLFile RTLFile-class
class:TrackDb TrackDb-class
class:TwoBitFile TwoBitFile-class
class:UCSCFile UCSCFile-class
class:WIGFile WIGFile-class
cleanupBigWigCache BigWigFile
coerce,BasicTrackLine,character-method basicTrackLine-class
coerce,BasicTrackLine,GraphTrackLine-method wigTrackLine-class
coerce,Bed15TrackLine,character-method Bed15TrackLine-class
coerce,character,BasicTrackLine-method basicTrackLine-class
coerce,character,Bed15TrackLine-method Bed15TrackLine-class
coerce,character,GraphTrackLine-method wigTrackLine-class
coerce,character,Quickload-method Quickload-class
coerce,character,TrackLine-method ucscTrackLine-class
coerce,GenomicRanges,BigWigSelection-method BigWigSelection-class
coerce,GRanges,UCSCData-method UCSCData-class
coerce,GraphTrackLine,BasicTrackLine-method wigTrackLine-class
coerce,GraphTrackLine,character-method wigTrackLine-class
coerce,RangesList,BigWigSelection-method BigWigSelection-class
coerce,TrackLine,character-method ucscTrackLine-class
coerce,UCSCData,GRanges-method UCSCData-class
CompressedFile-class RTLFile-class
cpneTrack cpneTrack
export export
export,ANY,BamFile,ANY-method BamFile-methods
export,ANY,BEDFile,ANY-method BEDFile-class
export,ANY,BEDPEFile,ANY-method BEDFile-class
export,ANY,BigWigFile,ANY-method BigWigFile
export,ANY,character,character-method export
export,ANY,character,missing-method export
export,ANY,CompressedFile,missing-method export
export,ANY,connection,character-method export
export,ANY,connection,missing-method export
export,ANY,FastaFile,ANY-method FastaFile-class
export,ANY,GFFFile,ANY-method GFFFile-class
export,ANY,missing,character-method export
export,ANY,TabSeparatedFile,ANY-method TabixFile-methods
export,ANY,TwoBitFile,ANY-method TwoBitFile-class
export,ANY,UCSCFile,ANY-method UCSCFile-class
export,ANY,WIGFile,ANY-method WIGFile-class
export,DNAStringSet,character,ANY-method TwoBitFile-class
export,DNAStringSet,TwoBitFile,ANY-method TwoBitFile-class
export,GAlignmentPairs,BamFile,ANY-method BamFile-methods
export,GAlignments,BamFile,ANY-method BamFile-methods
export,GenomicRanges,BED15File,ANY-method BEDFile-class
export,GenomicRanges,BEDFile,ANY-method BEDFile-class
export,GenomicRanges,BigWigFile,ANY-method BigWigFile
export,GenomicRanges,GFFFile,ANY-method GFFFile-class
export,GenomicRanges,TabSeparatedFile,ANY-method TabixFile-methods
export,GenomicRanges,UCSCFile,ANY-method UCSCFile-class
export,GenomicRanges,WIGFile,ANY-method WIGFile-class
export,GenomicRangesList,BEDFile,ANY-method BEDFile-class
export,GenomicRangesList,GFFFile,ANY-method GFFFile-class
export,GenomicRangesList,UCSCFile,ANY-method UCSCFile-class
export,GenomicRangesList,WIGFile,ANY-method WIGFile-class
export,GRangesList,BEDFile,ANY-method BEDFile-class
export,GRangesList,GFFFile,ANY-method GFFFile-class
export,GRangesList,GTFFile,ANY-method GFFFile-class
export,List,BigWigFile,ANY-method BigWigFile
export,Pairs,BEDPEFile,ANY-method BEDFile-class
export,UCSCData,BED15File,ANY-method BEDFile-class
export,UCSCData,BEDFile,ANY-method BEDFile-class
export,UCSCData,UCSCFile,ANY-method UCSCFile-class
export,UCSCData,WIGFile,ANY-method WIGFile-class
export,XStringSet,FastaFile,ANY-method FastaFile-class
export.2bit TwoBitFile-class
export.2bit,ANY-method TwoBitFile-class
export.bed BEDFile-class
export.bed,ANY-method BEDFile-class
export.bed,UCSCData,characterORconnection-method UCSCData-class
export.bed15 BEDFile-class
export.bed15,ANY-method BEDFile-class
export.bed15,UCSCData-method UCSCData-class
export.bedGraph BEDFile-class
export.bedGraph,ANY-method BEDFile-class
export.bw BigWigFile
export.bw,ANY-method BigWigFile
export.gff GFFFile-class
export.gff,ANY-method GFFFile-class
export.gff,UCSCData,characterORconnection-method UCSCData-class
export.gff1 GFFFile-class
export.gff1,ANY-method GFFFile-class
export.gff2 GFFFile-class
export.gff2,ANY-method GFFFile-class
export.gff3 GFFFile-class
export.gff3,ANY-method GFFFile-class
export.ucsc UCSCFile-class
export.ucsc,ANY,ANY-method UCSCFile-class
export.ucsc,ANY,RTLFile-method UCSCFile-class
export.ucsc,UCSCData,characterORconnection-method UCSCData-class
export.wig WIGFile-class
export.wig,ANY-method WIGFile-class
exportToTabix TabixFile-methods
exportToTabix,ANY,character-method TabixFile-methods
FastaFile FastaFile-class
FastaFile-class FastaFile-class
FileForFormat RTLFile-class
formatDescription UCSCSchema-class
formatDescription,UCSCSchema-method UCSCSchema-class
genome,BrowserSession-method browserSession-class
genome,GFFFile-method GFFFile-class
genome,Quickload-method Quickload-class
genome,QuickloadGenome-method QuickloadGenome-class
genome,ucscCart-method ucscSession-class
genome,UCSCSchema-method UCSCSchema-class
genome,UCSCSession-method ucscSession-class
genome<-,BrowserSession-method browserSession-class
genome<-,UCSCSession-method ucscSession-class
genomeBrowsers genomeBrowsers
GenomicData GenomicData
GenomicRanges_OR_GenomicRangesList-class browseGenome
GenomicSelection GenomicSelection
getSeq,TwoBitFile-method TwoBitFile-class
getTable UCSCTableQuery-class
getTable,UCSCSession-method ucscSession-class
getTable,UCSCTableQuery-method UCSCTableQuery-class
GFF1File GFFFile-class
GFF1File-class GFFFile-class
GFF2File GFFFile-class
GFF2File-class GFFFile-class
GFF3File GFFFile-class
GFF3File-class GFFFile-class
GFFcolnames readGFF
GFFFile GFFFile-class
GFFFile-class GFFFile-class
GRangesForBSGenome GRangesForUCSCGenome
GRangesForUCSCGenome GRangesForUCSCGenome
GraphTrackLine-class wigTrackLine-class
GTFFile GFFFile-class
GTFFile-class GFFFile-class
GVFFile GFFFile-class
GVFFile-class GFFFile-class
import export
import,BamFile,ANY,ANY-method BamFile-methods
import,BED15File,ANY,ANY-method BEDFile-class
import,BEDFile,ANY,ANY-method BEDFile-class
import,BEDPEFile,ANY,ANY-method BEDFile-class
import,BigWigFile,ANY,ANY-method BigWigFile
import,ChainFile,ANY,ANY-method Chain-class
import,character,character,ANY-method export
import,character,missing,ANY-method export
import,CompressedFile,missing,ANY-method export
import,connection,character,ANY-method export
import,connection,missing,ANY-method export
import,FastaFile,ANY,ANY-method FastaFile-class
import,GFFFile,ANY,ANY-method GFFFile-class
import,missing,ANY,character-method export
import,TabixFile,ANY,ANY-method TabixFile-methods
import,TwoBitFile,ANY,ANY-method TwoBitFile-class
import,UCSCFile,ANY,ANY-method UCSCFile-class
import,WIGFile,ANY,ANY-method WIGFile-class
import.2bit TwoBitFile-class
import.2bit,ANY-method TwoBitFile-class
import.bed BEDFile-class
import.bed,ANY-method BEDFile-class
import.bed15 BEDFile-class
import.bed15,ANY-method BEDFile-class
import.bedGraph BEDFile-class
import.bedGraph,ANY-method BEDFile-class
import.bw BigWigFile
import.bw,ANY-method BigWigFile
import.chain Chain-class
import.chain,ANY-method Chain-class
import.gff GFFFile-class
import.gff,ANY-method GFFFile-class
import.gff1 GFFFile-class
import.gff1,ANY-method GFFFile-class
import.gff2 GFFFile-class
import.gff2,ANY-method GFFFile-class
import.gff3 GFFFile-class
import.gff3,ANY-method GFFFile-class
import.ucsc UCSCFile-class
import.ucsc,ANY-method UCSCFile-class
import.ucsc,RTLFile-method UCSCFile-class
import.wig WIGFile-class
import.wig,ANY-method WIGFile-class
initialize,UCSCData-method UCSCData-class
initialize,UCSCSession-method ucscSession-class
length,Quickload-method Quickload-class
length,QuickloadGenome-method QuickloadGenome-class
liftOver liftOver
liftOver,ANY,ANY-method liftOver
liftOver,GenomicRanges,Chain-method liftOver
mcols,QuickloadGenome-method QuickloadGenome-class
names,BrowserSession-method browserSession-class
names,QuickloadGenome-method QuickloadGenome-class
names,UCSCTableQuery-method UCSCTableQuery-class
names<-,UCSCTableQuery-method UCSCTableQuery-class
nrow,UCSCSchema-method UCSCSchema-class
offset,ChainBlock-method Chain-class
organism,QuickloadGenome-method QuickloadGenome-class
path RTLFile-class
path,BigWigFileList-method BigWigFile
path,RTLFile-method RTLFile-class
Quickload Quickload-class
quickload QuickloadGenome-class
Quickload-class Quickload-class
QuickloadGenome QuickloadGenome-class
QuickloadGenome-class QuickloadGenome-class
range,BrowserSession-method browserSession-class
range,ucscCart-method ucscSession-class
range,UCSCSession-method ucscSession-class
range,UCSCTableQuery-method UCSCTableQuery-class
range,UCSCView-method ucscView-class
range<- ucscSession-class
range<-,UCSCSession-method ucscSession-class
range<-,UCSCTableQuery-method UCSCTableQuery-class
range<-,UCSCView-method ucscView-class
ranges,ChainBlock-method Chain-class
RangesList-methods RangesList-methods
readGFF readGFF
referenceSequence QuickloadGenome-class
referenceSequence,QuickloadGenome-method QuickloadGenome-class
referenceSequence<- QuickloadGenome-class
referenceSequence<-,QuickloadGenome-method QuickloadGenome-class
releaseDate,QuickloadGenome-method QuickloadGenome-class
resource RTLFile-class
reversed Chain-class
reversed,ChainBlock-method Chain-class
RTLFile-class RTLFile-class
RTLFileList-class RTLFile-class
score,ANY-method GenomicData
score,ChainBlock-method Chain-class
seqinfo,BigWigFile-method BigWigFile
seqinfo,DNAStringSet-method QuickloadGenome-class
seqinfo,QuickloadGenome-method QuickloadGenome-class
seqinfo,TwoBitFile-method TwoBitFile-class
seqinfo,UCSCSession-method ucscSession-class
seqinfo<-,QuickloadGenome-method QuickloadGenome-class
SeqinfoForBSGenome GRangesForUCSCGenome
SeqinfoForUCSCGenome GRangesForUCSCGenome
sequence<- laySequence-methods
sequence<--methods laySequence-methods
show,BrowserSession-method browserSession-class
show,BrowserView-method browserView-class
show,Quickload-method Quickload-class
show,QuickloadGenome-method QuickloadGenome-class
show,RTLFile-method RTLFile-class
show,TrackLine-method ucscTrackLine-class
show,UCSCData-method UCSCData-class
show,UCSCTableQuery-method UCSCTableQuery-class
space,ChainBlock-method Chain-class
split,UCSCData,ANY-method UCSCData-class
split,UCSCData,Vector-method UCSCData-class
summary,BigWigFile-method BigWigFile
tableName UCSCTableQuery-class
tableName,UCSCSchema-method UCSCSchema-class
tableName,UCSCTableQuery-method UCSCTableQuery-class
tableName<- UCSCTableQuery-class
tableName<-,UCSCTableQuery-method UCSCTableQuery-class
tableNames UCSCTableQuery-class
tableNames,UCSCTableQuery-method UCSCTableQuery-class
targets targets
track UCSCTableQuery-class
track,QuickloadGenome-method QuickloadGenome-class
track,UCSCSession-method ucscSession-class
track,UCSCTableQuery-method UCSCTableQuery-class
track<- layTrack-methods
track<-,BrowserSession,ANY-method layTrack-methods
track<-,QuickloadGenome,ANY-method QuickloadGenome-class
track<-,QuickloadGenome,character-method QuickloadGenome-class
track<-,QuickloadGenome,RsamtoolsFile-method QuickloadGenome-class
track<-,QuickloadGenome,RTLFile-method QuickloadGenome-class
track<-,TrackDb,ANY-method TrackDb-class
track<-,UCSCSession,GenomicRangesList-method ucscSession-class
track<-,UCSCSession,RTLFile-method ucscSession-class
track<--methods layTrack-methods
TrackDb-class TrackDb-class
TrackLine-class ucscTrackLine-class
trackName UCSCTableQuery-class
trackName,UCSCTableQuery-method UCSCTableQuery-class
trackName<- UCSCTableQuery-class
trackName<-,UCSCTableQuery-method UCSCTableQuery-class
trackNames tracks-methods
trackNames,BrowserSession-method browserSession-class
trackNames,UCSCSession-method tracks-methods
trackNames,UCSCTableQuery-method UCSCTableQuery-class
trackNames,UCSCTrackModes-method tracks-methods
trackNames,UCSCView-method tracks-methods
trackNames-methods tracks-methods
trackNames<- tracks-methods
trackNames<-,UCSCTrackModes-method tracks-methods
trackNames<-,UCSCView-method tracks-methods
trackNames<--methods tracks-methods
TwoBitFile TwoBitFile-class
TwoBitFile-class TwoBitFile-class
UCSCData-class UCSCData-class
UCSCFile UCSCFile-class
UCSCFile-class UCSCFile-class
ucscGenomes ucscGenomes
ucscSchema UCSCTableQuery-class
ucscSchema,UCSCSchemaDescription-method UCSCSchema-class
ucscSchema,UCSCTableQuery-method UCSCTableQuery-class
UCSCSchema-class UCSCSchema-class
UCSCSession-class ucscSession-class
ucscTableQuery UCSCTableQuery-class
ucscTableQuery,UCSCSession-method UCSCTableQuery-class
UCSCTableQuery-class UCSCTableQuery-class
ucscTrackModes ucscTrackModes-methods
ucscTrackModes,character-method ucscTrackModes-methods
ucscTrackModes,missing-method ucscTrackModes-methods
ucscTrackModes,UCSCSession-method ucscTrackModes-methods
ucscTrackModes,ucscTracks-method ucscTrackModes-methods
ucscTrackModes,UCSCView-method ucscTrackModes-methods
UCSCTrackModes-class ucscTrackModes-class
ucscTrackModes-methods ucscTrackModes-methods
ucscTrackModes<- ucscTrackModes-methods
ucscTrackModes<-,UCSCView,character-method ucscTrackModes-methods
ucscTrackModes<-,UCSCView,UCSCTrackModes-method ucscTrackModes-methods
ucscTrackModes<--methods ucscTrackModes-methods
UCSCView-class ucscView-class
uri Quickload-class
uri,QuickloadGenome-method QuickloadGenome-class
visible browserView-class
visible,BrowserView-method browserView-class
visible,UCSCView-method ucscView-class
visible<- browserView-class
visible<-,BrowserView-method browserView-class
visible<-,UCSCView-method ucscView-class
WIGFile WIGFile-class
WIGFile-class WIGFile-class
wigToBigWig wigToBigWig
[,UCSCTrackModes,ANY,ANY,ANY-method ucscTrackModes-class
[<-,UCSCTrackModes,ANY,ANY,ANY-method ucscTrackModes-class
[[,Quickload,ANY,ANY-method Quickload-class
[[,TrackDb,ANY,ANY-method TrackDb-class
[[<-,TrackDb,ANY,ANY-method TrackDb-class
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