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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | Package: ShortRead
Type: Package
Title: FASTQ input and manipulation
Version: 1.36.0
Author: Martin Morgan, Michael Lawrence, Simon Anders
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
Description: This package implements sampling, iteration, and input of
FASTQ files. The package includes functions for filtering and
trimming reads, and for generating a quality assessment report.
Data are represented as DNAStringSet-derived objects, and
easily manipulated for a diversity of purposes. The package
also contains legacy support for early single-end, ungapped
alignment formats.
License: Artistic-2.0
LazyLoad: yes
Depends: BiocGenerics (>= 0.23.3), BiocParallel, Biostrings (>=
2.37.1), Rsamtools (>= 1.21.4), GenomicAlignments (>= 1.5.4)
Imports: Biobase, S4Vectors (>= 0.13.8), IRanges (>= 2.3.7),
GenomeInfoDb (>= 1.1.19), GenomicRanges (>= 1.21.6), hwriter,
methods, lattice, latticeExtra,
Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
biocViews: DataImport, Sequencing, QualityControl
NeedsCompilation: yes
Packaged: 2017-10-30 22:51:24 UTC; biocbuild
Built: R 3.4.2; x86_64-pc-linux-gnu; 'Thu, 09 Nov 2017 08:46:50 +0100'; unix
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