/usr/lib/R/site-library/ShortRead/script/qa-test.R is in r-bioc-shortread 1.36.0-1.
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1 2 3 4 5 6 7 8 9 10 11 | ## fastq
nLanes <- 50
library(ShortRead)
sp <- SolexaPath(system.file('extdata', package='ShortRead'))
rfq <- readFastq(analysisPath(sp), pattern="s_1_sequence.txt")
nms <- sprintf("file_%d.fastq", seq_len(nLanes))
qas <- lapply(nms, qa, dirPath=rfq)
qa <- do.call(rbind, qas)
res <- browseURL(report(qa))
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