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1 2 3 4 5 6 7 8 9 10 | <h2>Multiple Alignment</h2>
<a name="Multiple-Alignment"></a>
<p>
Number of reads matching 0, 1, ... times to the reference genome.
</p>
<pre>
ShortRead:::.plotMultipleAlignmentCount(qa[["multipleAlignment"]])
</pre>
@MULTIPLE_ALIGNMENT_COUNT_FIGURE@
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