/usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_3col_head.txt is in r-bioc-shortread 1.36.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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#SOFTWARE_VERSION @(#) $Id: qualityFilter.pl,v 1.8 2007/11/26 14:42:26 tc Exp $
#FILTER_CRITERION ((CHASTITY>=0.6))
TTAGAAATGTCCACTGCAGGACGTGG 11953 5
GAAAACTTAAAAAGGTGTTAAATTTT 0 0
GTTTTTTAGTGATTTCGTCATTTTTC 13000 3
TACATATACACATACACATACATATA 13000 56
GTGTTTTTCAGTGTAACTCACTCATC 13000 10
TAGATGCTAAATATCCCCCTCAAAGT 0 0
TGAGGGGTATGACTGAATATCTTCAG 13000 14
GGAAAATTTAGAAATGTCCACTGTAG 13000 50
GACTTGAAGTTATTATCATATAGATC 13000 4
GTATTTCACTTCCTTAAGTGTGTATA 0 0
GAGAAATAACAAAACTAACAGACATT 13000 2
GTAGGACATGGAATATGCCAAGAAAA 11953 71
GCCTCAACAGAAACAAAAATATTGAA 13000 37
GAAAATTTAGAAATGTCCAATGTAGG 11953 66
TGTGCATTTCTCATTTTTCACGTTTT 13000 93
TTGACTTCTTCCTTTCAAATTGTATC 13000 3
GATTTTCAGTTTTCTCGCCATATTTT 10906 57
GAAGGACTTAAATGACTCACTTAAAG 13000 4
GCAAAGTGAGTCCCAGGACAGCCAGG 13000 3
GGTATCAAGAGTTAAAGTTTTATGTA 13000 5
GGACCTGGAATATGGCGAGAAAACTG 13000 48
GTCCTACAGGGGACATTTCTAAATTT 11953 62
TGTATGACATGAAATATGGCAAGAAA 11953 10
TAGTAAAGTTTCTTTTATGAATGTGG 13000 255
TACAATGGTCACTAATCATTCTTAAC 0 0
GTGTATATCAATGAGTTACAATGAAA 13000 2
GAGAAATACACACTTTAGGACGTGAA 13000 49
GTGATTTTCAGTTCTCTCGCCATATT 11953 44
GTGGTTTTTATCATTTTCCATGTTTC 13000 5
GGACTAATAGCCACTTATCAGTGAGT 13000 8
GACACCTGGACAGATTAGATATTATT 0 0
GTGGAAAATTTAGAAATGTCCACTGT 13000 50
GTATGATAAAAACTTCAAATCTCTGA 13000 255
GTGATTTTCAGTTTTCTCGCCATATT 13000 44
GAATCCGGTTAAAGTTGGCAGTTGGT 0 0
GTGGATAATTTAGAAATGTCCACTGT 11953 51
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